Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01601 ATGGGTCCAACTGCGACCTCCGTGTCTAGTGACAACCCATTGGGTGATTCTGATACAATTGAGATAACCGGGAAGATCATGGTGGTGGCTATAGTATTCCTTTTCATGGTGGTTGTGTTTGTTCTTGTGCTTCATCTCTATGCAAAATGGTTCTGGTGGAACATGGGGGAGAACGCCGCTCCTCAGCCACGCCAGAGGCGGCGGAGGCGCCGCCGGTTTGTCTTCGCCCCCGGGCAAGACCCGGTGGTCTATGAGACCCACCAAGTTGGGCTTGACCCTTCAGTTTTAAAGTCCTTGCCAGTGTTGGTGTTCCAACCCGAGGACTTCAAAGAAGGTTTGGAGTGTGCAGTTTGTCTCTCTGAGATTGTTCAAGGGGAAAAGGCCAGGCTTTTGCCCAAATGCAATCATGGGTTCCATGTGGATTGTATTGACATGTGGTTCCATTCGCACTCCACTTGCCCTCTTTGTAGGAACCCTGTTGGTTTTGAATCGTGTAAAACAAGTGAAGAGAGTAATTTCTCAGGGAACATTGATTCATCATCTTTAGCTCACGAAGAGAATTCAGGTGCTGTGAGTGGCTCACAGTCTTCAAATTTTCCCACAAATGTGTTGGTTTGGGGAAACCAGACACAGGTTAGTTCTTTTGGGGTTTCCTTGGCAGAGGAAGAAGGGAGTTCTCAGCAGCCACCTTCTCCTCCATCATCTACACCATCTTCTTCTTCAGATTGTGGTAATGTTAATGGTAGATGTCATGGAATGTTGGTGATTGATATTCCAAGTGAGTGCACTTCCTCCTCTTTATCCCCTTCTGGAAGTAGGTGTGCTGAAGATGAGGTGAAATCACCAATGGCTGCCACATTGAGGTCATTTAAGAGGCTTTTGAGCCGGGACAAAAAGTTAAGTCCTTGCAGTCCAAGTTCTGTAGATGTGGAACACGCACAGAGCTAG 948 0.4778 MGPTATSVSSDNPLGDSDTIEITGKIMVVAIVFLFMVVVFVLVLHLYAKWFWWNMGENAAPQPRQRRRRRRRFVFAPGQDPVVYETHQVGLDPSVLKSLPVLVFQPEDFKEGLECAVCLSEIVQGEKARLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVGFESCKTSEESNFSGNIDSSSLAHEENSGAVSGSQSSNFPTNVLVWGNQTQVSSFGVSLAEEEGSSQQPPSPPSSTPSSSSDCGNVNGRCHGMLVIDIPSECTSSSLSPSGSRCAEDEVKSPMAATLRSFKRLLSRDKKLSPCSPSSVDVEHAQS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01601 315 CDD RING-H2_EL5-like 114 157 - -
Phac10g01601 315 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Phac10g01601 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 183 - -
Phac10g01601 315 SMART ring_2 115 156 IPR001841 -
Phac10g01601 315 MobiDBLite consensus disorder prediction 176 195 - -
Phac10g01601 315 MobiDBLite consensus disorder prediction 262 281 - -
Phac10g01601 315 Pfam Ring finger domain 114 157 IPR001841 -
Phac10g01601 315 SUPERFAMILY RING/U-box 95 162 - -
Phac10g01601 315 MobiDBLite consensus disorder prediction 216 243 - -
Phac10g01601 315 FunFam RING-H2 finger protein ATL3 83 162 - -
Phac10g01601 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 161 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01601 Phac-Chr10 39098030 39099617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01601 7 298 C3H Transcription Factor Family AT1G53820 42.679 5.13e-65 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01601 - - gmx:100775523 462.225