Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01592 ATGATGACCACCAACACCAGTGTCAAAAACAACAACGTTGGAGAATTTGGGGACACCACTCTCACCAAGGTTTTTGTTGGGGGCTTAGCATGGGAGACTCCCAAGGATGCCCTTAGGGACCATTTTGAAAAGTATGGTGAGATCCTTGAAGCTGTCATCATTTCTGATAAGCTTACTGCCAAATCCAAAGGCTATGGCTTTGTGACTTTCAAAGAGGCTGAGGCTGCCAAGAAGGCTTGCGAGGACTCTGCAACTCTTGTTATCAATGGCCGTAGAGCCAACTGCAATCTGGCTTTCTTAGGTGCTCGTCGTCCAAGGTCTTCTTCCACTGCTTCACCACCTCCGCAGCCGCAAGGAGGATCAAACAGTGGAGTGGTGAAGAACAATGCAGCAGGGAATCACGTGCAGCCATATTATCATCCACTGAGGACAACTGCTATGCCCTTCCACAATCACCCTCTTCCTTTCTATGGCTACACTCCAACCTACATTGTGACAGACATGAACTACAATTACAACCAGAAACTGAGCTATGGCAACGGTGGGGCATACCTGAATGGGCAGCAGTTGTCCCATGTGTACCCTAGGCAGGGTATTGTGGGTGGCAACACAGTAATGCCAGTGTACCCTCTCTATCAGTATCATCATCCAACGGAGACCATAGGCCTACCAGCACACAACTTTTATCCAACGGCACCCTGGGCCCCATTCACCATCATTTCCAAACCATCTTCTATCATTCCTCATACAGGTGTGTCACATGATAGCATCATAGGTCCAGCCAGATCATGTGTACTTGTAAATTATTCTCTTCACTTAGTTTAA 825 0.4764 MMTTNTSVKNNNVGEFGDTTLTKVFVGGLAWETPKDALRDHFEKYGEILEAVIISDKLTAKSKGYGFVTFKEAEAAKKACEDSATLVINGRRANCNLAFLGARRPRSSSTASPPPQPQGGSNSGVVKNNAAGNHVQPYYHPLRTTAMPFHNHPLPFYGYTPTYIVTDMNYNYNQKLSYGNGGAYLNGQQLSHVYPRQGIVGGNTVMPVYPLYQYHHPTETIGLPAHNFYPTAPWAPFTIISKPSSIIPHTGVSHDSIIGPARSCVLVNYSLHLV* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01592 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 91 IPR000504 GO:0003723
Phac10g01592 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 100 IPR000504 GO:0003723
Phac10g01592 274 PANTHER BOULE-RELATED 7 229 - -
Phac10g01592 274 MobiDBLite consensus disorder prediction 104 127 - -
Phac10g01592 274 Gene3D - 3 112 IPR012677 -
Phac10g01592 274 SMART rrm1_1 23 96 IPR000504 GO:0003723
Phac10g01592 274 SUPERFAMILY RNA-binding domain, RBD 18 121 IPR035979 GO:0003676
Phac10g01592 274 FunFam Putative RNA-binding protein ARP1 16 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01592 Phac-Chr10 39038537 39041303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01592 18 163 C2H2 Transcription Factor Family AT2G19380 29.221 2.16e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01592 - - vra:106778170 461.455