Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01574 ATGAAGATTGTAGGATTTGGTTTTCGTCCCACAGAAGTAGAACTTGTCGATTTTTACCTCAAACTCAAGTTGCTTGATGATCCCCGTGCCCACGTCATGACTGAGATAGATCTTTGCAATGTGGCACCTTGGGAAGTACCAGTGATGTTAGCAAAATCAGTAATACCATTCAGTGACCGAGAATGGTTTTTCTTCAGTCCTGTTGATTTCAAGTACTCAAATAGTAAAAGGGTTAACAGGAGAACCAAGAGTGGCTTTTGGAAACCCACTGGAAAAGACCGTGATATAAGGACCTGGGACACCACCACTGTCATTGGGACCAAGAAGACACTTGTTTTCTGCATTGGTCGTGCTTCCAAAGGTGTCAAGGCCAAGTGGGTTATTCACGAATATCATGCTCTTAATGCTCTTACCTTTCATAAAAACCAGAAGGCTTTTGTTTTATGCCGCTTGATAAAGAAACCTGGGAAAACAACTGAAGGAGGAACTGATGCACTGATTTGTGATGAAGGTGAATCCAGTAGAAGCGTGGTTTCTGACTGTGAAAATCAGGCAATAGCAGGACTTCCATCTGGAGGAACTTATACCGGAATGGAAACAGTCTGTGAGGCAACACATCAGGCAGATAAATGCATCTCTCCAATAGAACCCTCGCTAATTGATATTGAGCAGGATGAAGCATCTTCTTCAAACTTTGCATCTAACAATGCCTATTTTAGAAATGAAAACAACATTATGCAGATTCCATCTGAAACTACGCAGATTCCATCTGAAACTATGGAGTTTTCTTCTGAAACTAAGCAGATTCCATTTGAAACTATGGAATTTTCTTCTGAAACTAAGCAGATTCCATCTGAAACTACCCAAATCCCATCTGAAACTATGCAGATTCTATCTGAAACTAAACAGATTCCATCTGAAACTATGCAGATTTTATCTGAAACTAAGCAGATTCCATCTTCTGAAACTATCCCGAAGGATGTCTTGAATTCATTGAATTCATTTTTATTTAATGAGGTTGTCCTGAATCTATTTTTAGTTTATGAGACTTTAGTTATTGATGAAGAAGCTTTAGTTTATGAGAGTTTAGTTATTGACGAAGAAGCTATGCAGGTTCCATGTGAAGTTACGGAGACTCTATCTGAAGATATGCAGGCTATGTTAACTGAAACTATGCAAGCTATGCAAGCTGTATTATCTGAAGCTATGCAGGCTCCATTATCTGAAGCTACGCAGCCTCCATATGATATTACGCAGATTTCATCCGAAACTACGCAAACTCCTTGTATTCATATGCAGGTTCCAACTGAAGCTACGCAAACTCCAGCTGAAGCTAGTTTTTTTAACCGTTCCACTCAATCAAAGTCATTGAAAAGGGCATATTGCGAAAGCCCTTACATAGATGCTGAAGTCGTCCCTAAACTGGTAAATATATATATGCAGAGTCCATATAATATTGGGGAGTTTATCTCCTTTCGTTTCTGA 1485 0.3933 MKIVGFGFRPTEVELVDFYLKLKLLDDPRAHVMTEIDLCNVAPWEVPVMLAKSVIPFSDREWFFFSPVDFKYSNSKRVNRRTKSGFWKPTGKDRDIRTWDTTTVIGTKKTLVFCIGRASKGVKAKWVIHEYHALNALTFHKNQKAFVLCRLIKKPGKTTEGGTDALICDEGESSRSVVSDCENQAIAGLPSGGTYTGMETVCEATHQADKCISPIEPSLIDIEQDEASSSNFASNNAYFRNENNIMQIPSETTQIPSETMEFSSETKQIPFETMEFSSETKQIPSETTQIPSETMQILSETKQIPSETMQILSETKQIPSSETIPKDVLNSLNSFLFNEVVLNLFLVYETLVIDEEALVYESLVIDEEAMQVPCEVTETLSEDMQAMLTETMQAMQAVLSEAMQAPLSEATQPPYDITQISSETTQTPCIHMQVPTEATQTPAEASFFNRSTQSKSLKRAYCESPYIDAEVVPKLVNIYMQSPYNIGEFISFRF* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01574 494 SUPERFAMILY NAC domain 4 154 IPR036093 GO:0003677|GO:0006355
Phac10g01574 494 ProSiteProfiles NAC domain profile. 2 154 IPR003441 GO:0003677|GO:0006355
Phac10g01574 494 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 274 - -
Phac10g01574 494 Gene3D NAC domain 11 158 IPR036093 GO:0003677|GO:0006355
Phac10g01574 494 Pfam No apical meristem (NAM) protein 4 132 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01574 Phac-Chr10 38918914 38923071 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01574 4 161 NAC Transcription Factor Family AT4G35580 47.826 2.70e-39 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phac10g01574 NAM 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01574 - - vun:114167348 442.965