Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01573 ATGTTAGCAAAATCAGTAATACCATTCAGTGACCGAGAATGGTTTTTCTTCAGTCCTGTTGATTTCAAGTACTCAAATAGTAAAAGGGTTAACAGGAGAACCAAGAGTGGCTTTTGGAAACCCACTGGAAAAGACCGTGATATAAGGACCTGGGACACCACCACTGTCATTGGGACCAAGAAGACACTTGTTTTCTGCATTGGTCGTGCTTCCAAAGGTGTCAAGGCCAAGTGGGTTATTCACGAATATCATGCTCTTAATGCTCTTACCTTTCATAAAAACCAGAAGGCTTTTGTTTTATGCCGCTTGATAAAGAAACCTGGGAAAACAACTGAAGGAGGAACTGATGCACTGATTTGTGATGAAGGTGAATCCAGTAGAAGCGTGGTTTCTGACTGTGAAAATCAGGCAATAGCAGGACTTCCATCTGGAGGAACTTATACCGGAATGGAAACAGTCTGTGAGGCAACACATCAGGCAGATAAATGCATCTCTCCAATAGAACCCTCGCTAATTGATATTGAGCAGGATGAAGCATCTTCTTCAAACTTTGCATCTAACAATGCCTATTTTAGAAATGAAAACAACATTATGCAGATTCCATCTGAAACTACGCAGATTCCATCTGAAACTATGGAGTTTTCTTCTGAAACTAAGCAGATTCCATTTGAAACTATGGAATTTTCTTCTGAAACTAAGCAGATTCCATCTGAAACTACCCAAATCCCATCTGAAACTATGCAGATTCTATCTGAAACTAAACAGATTCCATCTGAAACTATGCAGATTTTATCTGAAACTAAGCAGATTCCATCTTCTGAAACTATCCCGAAGGATGTCTTGAATTCATTGAATTCATTTTTATTTAATGAGGTTCCATGTGAAGTTACGGAGACTCTATCTGAAGATATGCAGGCTATGTTAACTGAAACTATGCAAGCTATGCAAGCTGTATTATCTGAAGCTATGCAGGCTCCATTATCTGAAGCTACGCAGCCTCCATATGATATTACGCAGATTTCATCCGAAACTACGCAAACTCCTTGTATTCATATGCAGGTTCCAACTGAAGCTACGCAAACTCCAGCTGAAGCTAGTTTTTTTAACCGTTCCACTCAATCAAAGTCATTGAAAAGGGCATATTGCGAAAGCCCTTACATAGATGCTGAAGTCGTCCCTAAACTGGATGCTAATATTGGAGATATTTCAATTATGTATACTAAATATCTTAATTCAGATGAATACTATTCATCAAAAAGGTTTAAAACATCATACGATGTTGCACCTGGTGACACATGTCTTCTATTTTCTAACCAAGAACCAAATCAAGAGAAACAAGAAAGTATATTTCAAGATGATTTCTGGGCAGAGGAGACATCCTCATGTGACTCTACAACAAGTAAACCTTTGGAGATCAATTGTTTTGAAATTTCTAGTTTTCCTTGCATTTTGAGGTCATGA 1461 0.3833 MLAKSVIPFSDREWFFFSPVDFKYSNSKRVNRRTKSGFWKPTGKDRDIRTWDTTTVIGTKKTLVFCIGRASKGVKAKWVIHEYHALNALTFHKNQKAFVLCRLIKKPGKTTEGGTDALICDEGESSRSVVSDCENQAIAGLPSGGTYTGMETVCEATHQADKCISPIEPSLIDIEQDEASSSNFASNNAYFRNENNIMQIPSETTQIPSETMEFSSETKQIPFETMEFSSETKQIPSETTQIPSETMQILSETKQIPSETMQILSETKQIPSSETIPKDVLNSLNSFLFNEVPCEVTETLSEDMQAMLTETMQAMQAVLSEAMQAPLSEATQPPYDITQISSETTQTPCIHMQVPTEATQTPAEASFFNRSTQSKSLKRAYCESPYIDAEVVPKLDANIGDISIMYTKYLNSDEYYSSKRFKTSYDVAPGDTCLLFSNQEPNQEKQESIFQDDFWAEETSSCDSTTSKPLEINCFEISSFPCILRS* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01573 486 Gene3D NAC domain 2 110 IPR036093 GO:0003677|GO:0006355
Phac10g01573 486 SUPERFAMILY NAC domain 8 106 IPR036093 GO:0003677|GO:0006355
Phac10g01573 486 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 234 - -
Phac10g01573 486 ProSiteProfiles NAC domain profile. 1 106 IPR003441 GO:0003677|GO:0006355
Phac10g01573 486 Pfam No apical meristem (NAM) protein 10 84 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01573 Phac-Chr10 38918914 38923071 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01573 3 106 NAC Transcription Factor Family AT5G17260 50.467 1.10e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phac10g01573 NAM 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01573 - - vun:114167348 509.605