Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01572 ATGAAGATTGTAGGATTTGGTTTTCGTCCCACAGAAGTAGAACTTGTCGATTTTTACCTCAAACTCAAGTTGCTTGATGATCCCCGTGCCCACGTCATGACTGAGATAGATCTTTGCAATGTGGCACCTTGGGAAGTACCAGTGATGTTAGCAAAATCAGTAATACCATTCAGTGACCGAGAATGGTTTTTCTTCAGTCCTGTTGATTTCAAGTACTCAAATAGTAAAAGGGTTAACAGGAGAACCAAGAGTGGCTTTTGGAAACCCACTGGAAAAGACCGTGATATAAGGACCTGGGACACCACCACTGTCATTGGGACCAAGAAGACACTTGTTTTCTGCATTGGTCGTGCTTCCAAAGGTGTCAAGGCCAAGTGGGTTATTCACGAATATCATGCTCTTAATGCTCTTACCTTTCATAAAAACCAGAAGGCTTTTGTTTTATGCCGCTTGATAAAGAAACCTGGGAAAACAACTGAAGGAGGAACTGATGCACTGATTTGTGATGAAGGTGAATCCAGTAGAAGCGTGGTTTCTGACTGTGAAAATCAGGCAATAGCAGGACTTCCATCTGGAGGAACTTATACCGGAATGGAAACAGTCTGTGAGGCAACACATCAGGCAGATAAATGCATCTCTCCAATAGAACCCTCGCTAATTGATATTGAGCAGGATGAAGCATCTTCTTCAAACTTTGCATCTAACAATGCCTATTTTAGAAATGAAAACAACATTATGCAGATTCCATCTGAAACTACGCAGATTCCATCTGAAACTATGGAGTTTTCTTCTGAAACTAAGCAGATTCCATTTGAAACTATGGAATTTTCTTCTGAAACTAAGCAGATTCCATCTGAAACTACCCAAATCCCATCTGAAACTATGCAGATTCTATCTGAAACTAAACAGATTCCATCTGAAACTATGCAGATTTTATCTGAAACTAAGCAGATTCCATCTTCTGAAACTATCCCGAAGGATGTCTTGAATTCATTGAATTCATTTTTATTTAATGAGGTTCCATGTGAAGTTACGGAGACTCTATCTGAAGATATGCAGGCTATGTTAACTGAAACTATGCAAGCTATGCAAGCTGTATTATCTGAAGCTATGCAGGCTCCATTATCTGAAGCTACGCAGCCTCCATATGATATTACGCAGATTTCATCCGAAACTACGCAAACTCCTTGTATTCATATGCAGGTTCCAACTGAAGCTACGCAAACTCCAGCTGAAGCTAGTTTTTTTAACCGTTCCACTCAATCAAAGTCATTGAAAAGGGCATATTGCGAAAGCCCTTACATAGATGCTGAAGTCGTCCCTAAACTGGATGCTAATATTGGAGATATTTCAATTATGTATACTAAATATCTTAATTCAGATGAATACTATTCATCAAAAAGGTTTAAAACATCATACGATGTTGCACCTGGTGACACATGTCTTCTATTTTCTAACCAAGAACCAAATCAAGAGAAACAAGAAAGTATATTTCAAGATGATTTCTGGGCAGAGGAGACATCCTCATGTGACTCTACAACAAGTAAACCTTTGGAGATCAATTGTTTTGAAATTTCTAGTTTTCCTTGCATTTTGAGGTCATGA 1605 0.3888 MKIVGFGFRPTEVELVDFYLKLKLLDDPRAHVMTEIDLCNVAPWEVPVMLAKSVIPFSDREWFFFSPVDFKYSNSKRVNRRTKSGFWKPTGKDRDIRTWDTTTVIGTKKTLVFCIGRASKGVKAKWVIHEYHALNALTFHKNQKAFVLCRLIKKPGKTTEGGTDALICDEGESSRSVVSDCENQAIAGLPSGGTYTGMETVCEATHQADKCISPIEPSLIDIEQDEASSSNFASNNAYFRNENNIMQIPSETTQIPSETMEFSSETKQIPFETMEFSSETKQIPSETTQIPSETMQILSETKQIPSETMQILSETKQIPSSETIPKDVLNSLNSFLFNEVPCEVTETLSEDMQAMLTETMQAMQAVLSEAMQAPLSEATQPPYDITQISSETTQTPCIHMQVPTEATQTPAEASFFNRSTQSKSLKRAYCESPYIDAEVVPKLDANIGDISIMYTKYLNSDEYYSSKRFKTSYDVAPGDTCLLFSNQEPNQEKQESIFQDDFWAEETSSCDSTTSKPLEINCFEISSFPCILRS* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01572 534 Pfam No apical meristem (NAM) protein 4 132 IPR003441 GO:0003677|GO:0006355
Phac10g01572 534 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 280 - -
Phac10g01572 534 Gene3D NAC domain 11 158 IPR036093 GO:0003677|GO:0006355
Phac10g01572 534 ProSiteProfiles NAC domain profile. 2 154 IPR003441 GO:0003677|GO:0006355
Phac10g01572 534 SUPERFAMILY NAC domain 4 154 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01572 Phac-Chr10 38918914 38923071 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01572 4 161 NAC Transcription Factor Family AT4G35580 47.826 9.16e-39 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phac10g01572 NAM 2.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01572 - - vun:114167348 566.229