Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01571 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCCGATAGCAGAGAGGAGGAGGAGGAAGAGGAAGCAGCAGAAGAAATCATCACAAGAGAAGATAGCAGCAGGTTGTTACACCAACACCAGGATGCAGCAGGTTCCAATTTCATCATCAGCAATCATCATCATCATCATCACCACACAACAAAGCAGCTAGACTTCATGGACTTGACGCTGGGGAGCAGCAAGGATGAGGGGAATTTGCAAGGATCGGGAGGTGGTGCTTCATCGGTGTTTCCTCATCATGCAAGTGGTAGTTCTTCTGCCGATGGTAACGTGAACAACCTGCAGCAGCCTTCCGAGAAGGAGCACATGTTTGACAAAGTTGTGACACCAAGTGATGTGGGGAAGCTGAACCGATTGGTGATACCAAAGCAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAGCCAATGAGAAGGGGCTGCTGCTGAATTTTGAGGACAGGAATGGTAAGTTATGGAGGTTCAGGTACTCTTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCCAGCGTGGTGTAGGGGAGTTGTATAGGCATAGGTTGTACATAGATTGGAGGAGAAGGCCTGATCACCATCACCATCATGGCCCTGACCCTTCAACCGCACTCTTCACACCTTTCTTTCTTCCCAATCAGCCTCACTTTATCAGATGGGGTGCCACTGGCAGATTGTACACCCTCCCCTCGCCAAACCCACCACGCCACCATGACCATTTGCAACAACACCTCAATTACAACACTATGTATCATCAACATCATCATCCCTTTCATCACCAATTGCAAGCTGCTGCTGGTGCTGCTGCTGCTGGAAATGGAACTCATCACTACAATTATCATGACATGAGTACTTCAGGATCTGGCTCGGTCTATTACCTCAGGTCAACACCCCAACCAATGCCATTGACTGATCACCAAATCTTGAACACAAGACAACAACAAGAGGGAGGCAATGTTTCTCATCCTCCCATAATCATTGATTCTGTTCCAGTTGCTCACCACCATCATCATCACCACCACCATGGTGGCAAGAGTGGTTCTAGTACTAGTACTAGTCCTAGCACTGCAGGCAAAAGACTGAGGCTGTTTGGGGTGAATATGGAATGTGCTTCTTCAACATCAGAAGATCCCAACTGCTTCAGCTTATTGTCCTCATCTTCAATGGCACATGTGACAATGGCTAATTCCAATTCACCTCCCTCTTCTTCACTACCGCCTCTTCAGCTTTTAAGGGAAGACTCACTTTCATCACCATCATCAGCGAGGTTTGGGGATCAGAGAGGGGAACCTTCAATGCTTTTTGATCTGGATCCATCTTTGCAATACCGGCAGTGA 1431 0.4752 MELMQEVKGYSDSREEEEEEEAAEEIITREDSSRLLHQHQDAAGSNFIISNHHHHHHHTTKQLDFMDLTLGSSKDEGNLQGSGGGASSVFPHHASGSSSADGNVNNLQQPSEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLYIDWRRRPDHHHHHGPDPSTALFTPFFLPNQPHFIRWGATGRLYTLPSPNPPRHHDHLQQHLNYNTMYHQHHHPFHHQLQAAAGAAAAGNGTHHYNYHDMSTSGSGSVYYLRSTPQPMPLTDHQILNTRQQQEGGNVSHPPIIIDSVPVAHHHHHHHHHGGKSGSSTSTSPSTAGKRLRLFGVNMECASSTSEDPNCFSLLSSSSMAHVTMANSNSPPSSSLPPLQLLREDSLSSPSSARFGDQRGEPSMLFDLDPSLQYRQ* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01571 476 MobiDBLite consensus disorder prediction 364 388 - -
Phac10g01571 476 SUPERFAMILY DNA-binding pseudobarrel domain 113 218 IPR015300 -
Phac10g01571 476 Gene3D - 111 229 IPR015300 -
Phac10g01571 476 MobiDBLite consensus disorder prediction 1 32 - -
Phac10g01571 476 Pfam B3 DNA binding domain 117 221 IPR003340 GO:0003677
Phac10g01571 476 ProSiteProfiles B3 DNA-binding domain profile. 117 222 IPR003340 GO:0003677
Phac10g01571 476 SMART B3_2 117 222 IPR003340 GO:0003677
Phac10g01571 476 FunFam B3 domain-containing protein 110 230 - -
Phac10g01571 476 MobiDBLite consensus disorder prediction 74 117 - -
Phac10g01571 476 MobiDBLite consensus disorder prediction 74 111 - -
Phac10g01571 476 MobiDBLite consensus disorder prediction 424 456 - -
Phac10g01571 476 CDD B3_DNA 115 204 IPR003340 GO:0003677
Phac10g01571 476 MobiDBLite consensus disorder prediction 424 476 - -
Phac10g01571 476 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 411 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01571 Phac-Chr10 38900088 38903143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01571 108 404 RAV Transcription Factor Family AT2G46870 48.322 4.06e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac10g01571 B3 2.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01571 K09287 - gmx:100778733 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01571 10 38900088 38903143 Phac10g01571 10 38900088 38903143 ECH