LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac10g01565	ATGGACGCGTACTCCTCTGGAGAAGAAGTCGTTGTAAAGACGAGAAAACCGTATACGATCACAAAGCAAAGGGAACGATGGACAGAGGAGGAGCATAATAGGTTTCTAGAAGCTTTGAAACTGCACGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGCCACGCACAGAAGTTTTTTACAAAGTTGGAGAAAGAGGCCCTTGTAAAGGGTGTTCCAATTGGACAAGCTCTTGACATAGATATTCCCCCTCCACGGCCCAAAAGAAAACCAAGCAATCCTTATCCTCGGAAGACCAGGATTGGTACCGCAACATTACATAGTGGAGCAAAGGATGGAAATTTAGTTGAATCTTCACATGACAACCAAGCACTGGACTTGGAAAAAGAACCACTTCCGGAGAAATATGATTTAGACGAGGGGCTAACAACAGTAAAGGAAAATAAGGATGAGAACTGCTCAAAAGTATTTAAAGTTATCCAGGAGGTACCCTGTTCCTCTATATCTTCAGCAAACAGGAGTTCAATATCTATGTCAGTGCCGCTGGGAAATTCATGCGTATTAAAGGAGATTACAAGTTCAGTGAAAGAGGTAATAACTCGAGATGAAAATACTGAATCATTTCTGACTGTTGAACTTGGAAACAGGAATTTGGAGATCAATGATGGAAAACAGGCTAATGGCACTAGTAAAAACTCCACGTTGGAGAATTCTGATGCTTTACAAACGAAATTGGTTCAAAATGAGAAAACAGATGGTCTCGATGGTGCATTAACAATAGATGGGATGCAAAGCAATCAGAATTACCCTAGACATGTAACTGTGCACGTTGTTGACGGGAAACTTGGAACAAGTACTCAAAATCCATCACAAGATCTGCTGTTTCGAGACTCCATGTTTCAGCCAATAGGAGGGGCTAATGGGCAACCAAATCTTTTCACCAATTCAGCTCCAACGAACACAAGTGAAATTCAAAATAATACAGCACGATCTTCTGTTCATCAATCATTTCTTCCGTATCCTCCCTTCACACAGCACAACCAGGACGATTACCAATCATTTCTTCACATGTCTTCCACGTTTTCTAATCTTGTTGTCTCTACCTTGCTGCAAAACCCCGCAGCTCATGCTGCAGCAAGTTTCGCAGCTACATTTTGGCCCTATGCAAATCCAGAAACTTCAGCAGATTCTCCTAGGTGCTCCCAAGGAGGTTTCACATCTAGACAAATCGGTTCCCCTCCAAGCGTTGCAGCTATTGCAGCTGCTACTGTAGCTGCTGCAACTGCGTGGTGGGCAGCTCATGGATTGCTTCCTTTGTGTGCTCCTCTTCATACTGCTTTTACCTGTCCTCCTGCATCTGTGACTGCAGTCCCATCAATGAATCTTCCTGTGCAAGATCAAAAGAAGCATCCAGAATACTCGGAAGCACCGCAAGCTCAACATTCAGATTTAAAGTCACTAGCTGTCATTTCATCAGATTCTGAGACTGGAGACGCCAAGTTAAATACTTCACCAAAGGCTACTGATCATGTGACGAACGAAACAATTTCTGAGCACCTTGATTCCGACAAAACAAAGGGCAGAAAACAGGTTGACCGTTCCTCGTGTGGTTCCAACACAGCCTCAAGCAGCGATGTGGAAACTGATGCACTAGGGAAGGATGAGAAAGGGAAGGAAGAGCCTGAAACACCCGATGCTAACAATTTAGCCATTGAGTTTAGTAATCGTCGTAGAAGCATTTACAACCTTACTGATTCTTGGAAAGAGGTCTCTTCAGAGGGGAGACTAGCATTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCTCAGAGCTTTTCACCTCCTCATGCTTTAAAGAATAAGGACCAAATGGACATCACCAATGATAACAAGCAAAACATAGCCGACAGAACTGAAGACTTTGACAGCAAGAAATGCAGTTCTAATGCACTGCATAAAATTCCGCCATTTGTAGAAAATAACGTGGGACTGTTAACCATTGGGCTTGGACAAGGAAAGCTTAAGACTCGTCGAACAGGCTTTAAACCCTACAAAAGATGTTCCGTGGAGGCCAGGGAAAATAGGGTTGGACCGAACAATCAAGGTGAAGAGAAAGGTTGTAAGAGAATACGTTTGGAAGGGGATACTTCGACTTGA	2181	0.437	MDAYSSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEALVKGVPIGQALDIDIPPPRPKRKPSNPYPRKTRIGTATLHSGAKDGNLVESSHDNQALDLEKEPLPEKYDLDEGLTTVKENKDENCSKVFKVIQEVPCSSISSANRSSISMSVPLGNSCVLKEITSSVKEVITRDENTESFLTVELGNRNLEINDGKQANGTSKNSTLENSDALQTKLVQNEKTDGLDGALTIDGMQSNQNYPRHVTVHVVDGKLGTSTQNPSQDLLFRDSMFQPIGGANGQPNLFTNSAPTNTSEIQNNTARSSVHQSFLPYPPFTQHNQDDYQSFLHMSSTFSNLVVSTLLQNPAAHAAASFAATFWPYANPETSADSPRCSQGGFTSRQIGSPPSVAAIAAATVAAATAWWAAHGLLPLCAPLHTAFTCPPASVTAVPSMNLPVQDQKKHPEYSEAPQAQHSDLKSLAVISSDSETGDAKLNTSPKATDHVTNETISEHLDSDKTKGRKQVDRSSCGSNTASSSDVETDALGKDEKGKEEPETPDANNLAIEFSNRRRSIYNLTDSWKEVSSEGRLAFQALFSREVLPQSFSPPHALKNKDQMDITNDNKQNIADRTEDFDSKKCSSNALHKIPPFVENNVGLLTIGLGQGKLKTRRTGFKPYKRCSVEARENRVGPNNQGEEKGCKRIRLEGDTST*	727

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac10g01565	726	PANTHER	SWI/SNF COMPLEX-RELATED	7	620	-	-
	Phac10g01565	726	MobiDBLite	consensus disorder prediction	557	574	-	-
	Phac10g01565	726	ProSiteProfiles	SANT domain profile.	22	73	IPR017884	-
	Phac10g01565	726	Pfam	Myb-like DNA-binding domain	24	67	IPR001005	-
	Phac10g01565	726	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	22	71	IPR006447	GO:0003677
	Phac10g01565	726	SMART	sant	23	71	IPR001005	-
	Phac10g01565	726	MobiDBLite	consensus disorder prediction	502	520	-	-
	Phac10g01565	726	FunFam	protein REVEILLE 6 isoform X1	26	74	-	-
	Phac10g01565	726	MobiDBLite	consensus disorder prediction	541	556	-	-
	Phac10g01565	726	MobiDBLite	consensus disorder prediction	502	579	-	-
	Phac10g01565	726	SUPERFAMILY	Homeodomain-like	18	74	IPR009057	-
	Phac10g01565	726	MobiDBLite	consensus disorder prediction	86	126	-	-
	Phac10g01565	726	Gene3D	-	26	73	-	-
	Phac10g01565	726	CDD	SANT	26	69	IPR001005	-
	Phac10g01565	726	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	19	73	IPR017930	-
	Phac10g01565	726	MobiDBLite	consensus disorder prediction	521	540	-	-
	Phac10g01565	726	ProSiteProfiles	Myb-like domain profile.	19	69	IPR001005	-
	Phac10g01565	726	MobiDBLite	consensus disorder prediction	700	726	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac10g01565	Phac-Chr10	38799529	38814075	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Phac10g01565		Myb_DNA-binding	1.9e-13	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac10g01565	K12133		-	gmx:100101859	1175.61