Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01546 ATGCCACACACCATTCACACCTTTGTTACGCCCTCTTCTTCTTCATCTTCTTCTTCTTTGCTACCCTTCAAACTGTACAAACAGCAAGTGAAACGATTCGTTTTGCATTTCGGGCTTCCAAGGCGTTCCCGTACATCTCTAGAACCTTCTTCATCGTCTTCTTCTTTCTCTCCGCTGAGGAAAACTAGGGAGGTGGTTGAAGAAAGGATTTATGGAGAAGAATCTGTTTACCCTAAAAAAGGTGATGTTTTTGGGGGCGAAGAAGATAACGAAAAGCTTGGAAAATCGTGTGAAGTGTACGTGTGCAACCTCCCCAGGAGCTGTGATGCAGCTTACTTGCTTGACATGTTCAGGCCGTATGGGACCATTCTAGCTGTGGAGGTTTGCCGGGATGATGAGAGTAATGAAAGTAAGGGGTGTGGTTACGTGACACTGGGATCTATATACTCAGCAAGAAATGCAGTTGCTACGTTGGATGGATCAGATGTTGGTGGGCGCGAAATGAGGGTTAGATTTTCAATTGAGGTGAATTCTAAAAGGAGGGGTTTTAATAAAGTGAACTCTTCCATCAAGAGAATCTTATACTATGAATCTTCTCACAAGTTGTATGTTGGCAATCTTCCTAAGAATATCAGACCTGAACTGTTGAGAGATCTGTTTAGCAGATTTGGAAATATAGTTAGTCTTAGAGTATTGTTTGATTTTAAACAAGGGAAAAACCGAGCTTATGCCTTTCTCTCCTTTCAATCAGAGGCGGAACGTGATGCAGCAATGTCTCTCAATGGAACAGAATTCTATGGTCGAACACTAATAGTTAAAGAGGGTGTTGAGAGGACAGAACCTTTAACTGAAGCTTCATTGTCTGCATAA 870 0.4207 MPHTIHTFVTPSSSSSSSSLLPFKLYKQQVKRFVLHFGLPRRSRTSLEPSSSSSSFSPLRKTREVVEERIYGEESVYPKKGDVFGGEEDNEKLGKSCEVYVCNLPRSCDAAYLLDMFRPYGTILAVEVCRDDESNESKGCGYVTLGSIYSARNAVATLDGSDVGGREMRVRFSIEVNSKRRGFNKVNSSIKRILYYESSHKLYVGNLPKNIRPELLRDLFSRFGNIVSLRVLFDFKQGKNRAYAFLSFQSEAERDAAMSLNGTEFYGRTLIVKEGVERTEPLTEASLSA* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01546 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 169 IPR000504 GO:0003723
Phac10g01546 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 270 IPR000504 GO:0003723
Phac10g01546 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 277 IPR000504 GO:0003723
Phac10g01546 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Phac10g01546 289 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 48 180 - -
Phac10g01546 289 SUPERFAMILY RNA-binding domain, RBD 91 184 IPR035979 GO:0003676
Phac10g01546 289 PANTHER OS02G0815200 PROTEIN 16 273 - -
Phac10g01546 289 Gene3D - 41 182 IPR012677 -
Phac10g01546 289 Gene3D - 185 282 IPR012677 -
Phac10g01546 289 SMART rrm1_1 201 273 IPR000504 GO:0003723
Phac10g01546 289 SMART rrm1_1 98 171 IPR000504 GO:0003723
Phac10g01546 289 SUPERFAMILY RNA-binding domain, RBD 197 279 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01546 Phac-Chr10 38667412 38669635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01546 99 280 Eukaryotic Initiation Factors Gene Family AT2G36660 32.787 1.73e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01546 - - vra:106780336 462.611