Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac10g01546 | ATGCCACACACCATTCACACCTTTGTTACGCCCTCTTCTTCTTCATCTTCTTCTTCTTTGCTACCCTTCAAACTGTACAAACAGCAAGTGAAACGATTCGTTTTGCATTTCGGGCTTCCAAGGCGTTCCCGTACATCTCTAGAACCTTCTTCATCGTCTTCTTCTTTCTCTCCGCTGAGGAAAACTAGGGAGGTGGTTGAAGAAAGGATTTATGGAGAAGAATCTGTTTACCCTAAAAAAGGTGATGTTTTTGGGGGCGAAGAAGATAACGAAAAGCTTGGAAAATCGTGTGAAGTGTACGTGTGCAACCTCCCCAGGAGCTGTGATGCAGCTTACTTGCTTGACATGTTCAGGCCGTATGGGACCATTCTAGCTGTGGAGGTTTGCCGGGATGATGAGAGTAATGAAAGTAAGGGGTGTGGTTACGTGACACTGGGATCTATATACTCAGCAAGAAATGCAGTTGCTACGTTGGATGGATCAGATGTTGGTGGGCGCGAAATGAGGGTTAGATTTTCAATTGAGGTGAATTCTAAAAGGAGGGGTTTTAATAAAGTGAACTCTTCCATCAAGAGAATCTTATACTATGAATCTTCTCACAAGTTGTATGTTGGCAATCTTCCTAAGAATATCAGACCTGAACTGTTGAGAGATCTGTTTAGCAGATTTGGAAATATAGTTAGTCTTAGAGTATTGTTTGATTTTAAACAAGGGAAAAACCGAGCTTATGCCTTTCTCTCCTTTCAATCAGAGGCGGAACGTGATGCAGCAATGTCTCTCAATGGAACAGAATTCTATGGTCGAACACTAATAGTTAAAGAGGGTGTTGAGAGGACAGAACCTTTAACTGAAGCTTCATTGTCTGCATAA | 870 | 0.4207 | MPHTIHTFVTPSSSSSSSSLLPFKLYKQQVKRFVLHFGLPRRSRTSLEPSSSSSSFSPLRKTREVVEERIYGEESVYPKKGDVFGGEEDNEKLGKSCEVYVCNLPRSCDAAYLLDMFRPYGTILAVEVCRDDESNESKGCGYVTLGSIYSARNAVATLDGSDVGGREMRVRFSIEVNSKRRGFNKVNSSIKRILYYESSHKLYVGNLPKNIRPELLRDLFSRFGNIVSLRVLFDFKQGKNRAYAFLSFQSEAERDAAMSLNGTEFYGRTLIVKEGVERTEPLTEASLSA* | 290 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac10g01546 | 289 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 99 | 169 | IPR000504 | GO:0003723 | |
Phac10g01546 | 289 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 202 | 270 | IPR000504 | GO:0003723 | |
Phac10g01546 | 289 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 200 | 277 | IPR000504 | GO:0003723 | |
Phac10g01546 | 289 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 97 | 175 | IPR000504 | GO:0003723 | |
Phac10g01546 | 289 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 48 | 180 | - | - | |
Phac10g01546 | 289 | SUPERFAMILY | RNA-binding domain, RBD | 91 | 184 | IPR035979 | GO:0003676 | |
Phac10g01546 | 289 | PANTHER | OS02G0815200 PROTEIN | 16 | 273 | - | - | |
Phac10g01546 | 289 | Gene3D | - | 41 | 182 | IPR012677 | - | |
Phac10g01546 | 289 | Gene3D | - | 185 | 282 | IPR012677 | - | |
Phac10g01546 | 289 | SMART | rrm1_1 | 201 | 273 | IPR000504 | GO:0003723 | |
Phac10g01546 | 289 | SMART | rrm1_1 | 98 | 171 | IPR000504 | GO:0003723 | |
Phac10g01546 | 289 | SUPERFAMILY | RNA-binding domain, RBD | 197 | 279 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac10g01546 | Phac-Chr10 | 38667412 | 38669635 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac10g01546 | 99 | 280 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 32.787 | 1.73e-18 | 83.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac10g01546 | - | - | vra:106780336 | 462.611 |