Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01545 ATGCCACACACCATTCACACCTTTGTTACGCCCTCTTCTTCTTCATCTTCTTCTTCTTTGCTACCCTTCAAACTGTACAAACAGCAAGTGAAACGATTCGTTTTGCATTTCGGGCTTCCAAGGCGTTCCCGTACATCTCTAGAACCTTCTTCATCGTCTTCTTCTTTCTCTCCGCTGAGGAAAACTAGGGAGGTGGTTGAAGAAAGGATTTATGGAGAAGAATCTGTTTACCCTAAAAAAGGTGATGTTTTTGGGGGCGAAGAAGATAACGAAAAGCTTGGAAAATCGTGTGAAGTGTACGTGTGCAACCTCCCCAGGAGCTGTGATGCAGCTTACTTGCTTGACATGTTCAGGCCGTATGGGACCATTCTAGCTGTGGAGGTTTGCCGGGATGATGAGAGTAATGAAAGTAAGGGGTGTGGTTACGTGACACTGGGATCTATATACTCAGCAAGAAATGCAGTTGCTACGTTGGATGGATCAGATGTTGGTGGGCGCGAAATGAGGGTTAGATTTTCAATTGAGGTGAATTCTAAAAGGAGGGGTTTTAATAAAGTGAACTCTTCCATCAAGAGAATCTTATACTATGAATCTTCTCACAAGTTGTATGTTGGCAATCTTCCTAAGAATATCAGACCTGAACTGTTGAGAGATCTGTTTAGCAGATTTGGAAATATAGTTAGTCTTAGAGTATTGTTTGATTTTAAACAAGGGAAAAACCGAGCTTATGCCTTTCTCTCCTTTCAATCAGAGGCGGAACGTGATGCAGCAATGTCTCTCAATGGAACAGTAAAATCTGCTTCCACCACTTTATGA 816 0.4228 MPHTIHTFVTPSSSSSSSSLLPFKLYKQQVKRFVLHFGLPRRSRTSLEPSSSSSSFSPLRKTREVVEERIYGEESVYPKKGDVFGGEEDNEKLGKSCEVYVCNLPRSCDAAYLLDMFRPYGTILAVEVCRDDESNESKGCGYVTLGSIYSARNAVATLDGSDVGGREMRVRFSIEVNSKRRGFNKVNSSIKRILYYESSHKLYVGNLPKNIRPELLRDLFSRFGNIVSLRVLFDFKQGKNRAYAFLSFQSEAERDAAMSLNGTVKSASTTL* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01545 271 SUPERFAMILY RNA-binding domain, RBD 197 263 IPR035979 GO:0003676
Phac10g01545 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 264 IPR000504 GO:0003723
Phac10g01545 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 169 IPR000504 GO:0003723
Phac10g01545 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Phac10g01545 271 PANTHER OS02G0815200 PROTEIN 16 263 - -
Phac10g01545 271 SUPERFAMILY RNA-binding domain, RBD 91 184 IPR035979 GO:0003676
Phac10g01545 271 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 48 180 - -
Phac10g01545 271 SMART rrm1_1 201 269 IPR000504 GO:0003723
Phac10g01545 271 SMART rrm1_1 98 171 IPR000504 GO:0003723
Phac10g01545 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 271 IPR000504 GO:0003723
Phac10g01545 271 Gene3D - 40 179 IPR012677 -
Phac10g01545 271 Gene3D - 180 266 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01545 Phac-Chr10 38667412 38669635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01545 96 264 Eukaryotic Initiation Factors Gene Family AT2G36660 30.588 6.31e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01545 - - vra:106780336 417.927