Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01540 ATGGGGGGTGGTAACATCAATTCAAGTGAATACAATGATACAACTGCAACCAAAATCTTTGTTGGAGGCTTAGCTTGGGAGACTCAAAGGGACACAGTGAGAAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTTATCACAGATAAGAACACTGGAAGATCCAAGGGTTATGGTTTTATCACATTCAAGGATCCAGAGGCAGCAAAGAAAGCATGTAAAAATCCCAATCCAATAATTGATGGAAGGAAAACAAATTGCAATATTGCATCTATTGGTGCAAACAAGAATCGCAGACAGGCTCCACAACATGGTCGGTTTGGAGCAGCACCTGGTTTGTTGGCTTCACCTGTTTATCATGATCCTTCCTCTACATATCTCCATCAAAACAATGTGGAATACACATTTCCTGATCCAACTTTTGGGCCATCTGAACCTATAGGTTTGGTCCATAACACTTACCCTTTTTCTGCTCAGTATGCACACATTAGCCAAGCTCAAGGTTTTGGAGTCCATTATCCCCAAATGATGAAGAATCATGTAACAGTTACAACAACAAAAAGAGAGGCACTAAGAACATGTGCAGATGCTTCACAAACCACTGAAATAACTTCTGAACAAGATTCTTCAGCTGAATCTTCAAATAAATAA 657 0.4003 MGGGNINSSEYNDTTATKIFVGGLAWETQRDTVRRYFEQFGEILEAVVITDKNTGRSKGYGFITFKDPEAAKKACKNPNPIIDGRKTNCNIASIGANKNRRQAPQHGRFGAAPGLLASPVYHDPSSTYLHQNNVEYTFPDPTFGPSEPIGLVHNTYPFSAQYAHISQAQGFGVHYPQMMKNHVTVTTTKREALRTCADASQTTEITSEQDSSAESSNK* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01540 218 SUPERFAMILY RNA-binding domain, RBD 10 109 IPR035979 GO:0003676
Phac10g01540 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 77 IPR000504 GO:0003723
Phac10g01540 218 CDD RRM_RBM24_RBM38_like 17 92 - -
Phac10g01540 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Phac10g01540 218 PANTHER BOULE-RELATED 8 180 - -
Phac10g01540 218 MobiDBLite consensus disorder prediction 199 218 - -
Phac10g01540 218 Gene3D - 5 111 IPR012677 -
Phac10g01540 218 SMART rrm1_1 18 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01540 Phac-Chr10 38633196 38635366 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01540 6 93 C2H2 Transcription Factor Family AT2G19380 42.045 1.95e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01540 - - pvu:PHAVU_004G102100g 426.787