Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01538 ATGGGGGGTGGTAACATCAATTCAAGTGAATACAATGATACAACTGCAACCAAAATCTTTGTTGGAGGCTTAGCTTGGGAGACTCAAAGGGACACAGTGAGAAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTTATCACAGATAAGAACACTGGAAGATCCAAGGGTTATGGTTTTATCACATTCAAGGATCCAGAGGCAGCAAAGAAAGCATGTAAAAATCCCAATCCAATAATTGATGGAAGGAAAACAAATTGCAATATTGCATCTATTGGTGCAAACAAGAATCGCAGACAGGCTCCACAACATGGTCGGTTTGGAGCAGCACCTGGTTTGTTGGCTTCACCTGTTTATCATGATCCTTCCTCTACATATCTCCATCAAAACAATGTGGAATACACATTTCCTGATCCAACTTTTGGATATATTCAACAACATTCACATGACATGATGTACCCCATGAACTGTTATGGAATACTTGGAGGGCAACAGTTCTCAACTTACTACCCCTACATTAGGCCATCTGAACCTATAGGTTTGGTCCATAACACTTACCCTTTTTCTGCTCAGTATGCACACATTAGCCAAGCTCAAGGTTTTGGAGTCCATTATCCCCAAATGATGCAATCTCCCATTATTCCTAGGCACTATGGCTCACCTGGTATCTTTAGATTTCCTTCTTCAATGGAAATGCCAACAACTATGAGTGCAGGTAAACAAAGTATACTTTATTGA 744 0.4059 MGGGNINSSEYNDTTATKIFVGGLAWETQRDTVRRYFEQFGEILEAVVITDKNTGRSKGYGFITFKDPEAAKKACKNPNPIIDGRKTNCNIASIGANKNRRQAPQHGRFGAAPGLLASPVYHDPSSTYLHQNNVEYTFPDPTFGYIQQHSHDMMYPMNCYGILGGQQFSTYYPYIRPSEPIGLVHNTYPFSAQYAHISQAQGFGVHYPQMMQSPIIPRHYGSPGIFRFPSSMEMPTTMSAGKQSILY* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01538 247 PANTHER BOULE-RELATED 8 239 - -
Phac10g01538 247 CDD RRM_RBM24_RBM38_like 17 92 - -
Phac10g01538 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Phac10g01538 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 77 IPR000504 GO:0003723
Phac10g01538 247 SUPERFAMILY RNA-binding domain, RBD 10 109 IPR035979 GO:0003676
Phac10g01538 247 SMART rrm1_1 18 90 IPR000504 GO:0003723
Phac10g01538 247 Gene3D - 5 111 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01538 Phac-Chr10 38633196 38635366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01538 6 93 C2H2 Transcription Factor Family AT2G19380 42.045 5.39e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01538 - - gmx:100786226 373.629