Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01534 ATGCCGGAAAACATGAGCATATCTGTCAATGGACAATCTCAAGTCCCACCTGGCTTCAGGTTCCATCCAACTGAAGAGGAGCTTCTTCAGTACTACTTGAGGAAAAAGGTCTCTTACGAGAAGATTGACCTCGATGTCATTCGTGATGTTGATCTCAACAAGCTCGAGCCATGGGATATTCAAGAGAAATGCAAAATAGGAACCACTCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACAGGAACTCGCACCAATCGCGCCACTGCTGCGGGATTCTGGAAGGCCACTGGCCGTGACAAAGTCATATACAGCAACGGAAAGAGGATTGGAATGAGAAAGACTCTGGTTTTCTACAAAGGAAGAGCCCCACATGGCCAGAAATCTGACTGGATCATGCATGAATACAGACTAGACGACAACACCACCAGCGACACCAATATTGTGTCCAATGTGATGGGGGACGGTGGTCAGGAAGAAGGGTGGGTGGTGTGTAGGATATTCAAGAAGAAGAACAACCTGAAAACCCTAGACAGCCCATTAGGTTCGGGAGAAGGTAGAAGGAGCCAGTTGTTCGAGTCGTGCGACGAGGGAGCTTTGGAGCAAATACTTCAGCAAATGGGAAGGGGTTGCAAGGAAGAGAGCAGCTACGAGGGAAACTACAGCTATGGAAGATTGGGAAGGGGTTACGAGACAGGTGTGAACAATGACAGGTTCATGAAGCTGCCAAGCCTAGAGAGCCCAAAATCTAGAAGCATGGAGAGTCAGCAGAACAACAACAACAGTAATAATGGTGATAACAACAACGAGCAGAATAATAATGGGTACCATCCCATTATTCCAGTAGACATGGGGACGGACAATGAAGGGTCATTCGCAACCCACCAGGTGAGTGGTGGTGACCCCAACATGGTTCATCCAATGGAGGCATCATCAGGTGGTGGAGGCCTCACCAACTGGGCTGCGCTGGACCGTTTGGTTGCCTCTCAGCTCAATGGCCAAACCGAGGCCTCTAGGCACTTCGCATGCTTCAACGACCCCACCATCGCCTACTGCACTACCCACCACGATCTACCATTGCCCACCCTCAGATCCTCATCAAATCCTTCATCAACCTCCACCCTCACCAGACCTTCCGCTGCATCCGCATACATCAACCCCGCACACGACTTCACCAGCGAGATTGACCTCTGGAACTTCACTCGCTCCACCTCCGAACCTCTCTGCCACGTCTCCAACACCTCACTCTAG 1266 0.5039 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTSDTNIVSNVMGDGGQEEGWVVCRIFKKKNNLKTLDSPLGSGEGRRSQLFESCDEGALEQILQQMGRGCKEESSYEGNYSYGRLGRGYETGVNNDRFMKLPSLESPKSRSMESQQNNNNSNNGDNNNEQNNNGYHPIIPVDMGTDNEGSFATHQVSGGDPNMVHPMEASSGGGGLTNWAALDRLVASQLNGQTEASRHFACFNDPTIAYCTTHHDLPLPTLRSSSNPSSTSTLTRPSAASAYINPAHDFTSEIDLWNFTRSTSEPLCHVSNTSL* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01534 421 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 269 - -
Phac10g01534 421 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Phac10g01534 421 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Phac10g01534 421 MobiDBLite consensus disorder prediction 253 281 - -
Phac10g01534 421 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Phac10g01534 421 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Phac10g01534 421 FunFam NAC domain-containing protein 24 179 - -
Phac10g01534 421 MobiDBLite consensus disorder prediction 245 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01534 Phac-Chr10 38568079 38570690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01534 1 420 NAC Transcription Factor Family AT2G46770 54.462 8.08e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phac10g01534 NAM 3.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01534 - - gmx:100793308 678.322