Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01529 ATGTCTCAACAAAGGCAAGCTCAGATGGTAGGTGGTAACAACCAGGAGCAATATAATGACACAACTTTTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAAAGGGACACAATGAGGAGGTACTTTGAGCAATTTGGAGAGATCTTGGAGGCTGTTGTGATCACAGACAAGAACACTGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGAGGCGGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGGAGGAGGGCTAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAACCGACCAGCAACTTTTCAGCATGGTGCAGGACGGTTCAGGCCTCCACCTGTACTGGTGACATCACCTGCTTATCATGGTTCTTCATCTACTACAACATTTTCCCATCAACCCCCTAGATATTCTGGATATTCTCAAGACACCTTGTATCCTACGAACTACTATAATGTCTATGGAGTTCAGCAATTTTCAGCTTACTACCCATCTGCTGGAGATTCTGGTGCAGTAGGGTTGATCCATAATATCTATCCCTTTTATGGTCAATATGCACAGAGTATTCAGGCTCATGGTTTTGGGGTTCAATACCCACAAATGGCACAGTTTCCATTTTTGCCTCAGCATTATGGCTCCACTGGGATATTGTCATATCCTTCTTCAGTAGCAGTGCCAACTAATAGTGCAGTTTCAGTGACAGGAACTGCAACCACAACTACAACACCAACAACATCAACAGGTGTGACAGCAACAGTGGCTGGTAGTTCACAAGCCTCACAAGCAGCTTCTGAACAAAATTCTACATCTACAAAGATGCAGAACATGCAAGGCTAA 864 0.4456 MSQQRQAQMVGGNNQEQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPATFQHGAGRFRPPPVLVTSPAYHGSSSTTTFSHQPPRYSGYSQDTLYPTNYYNVYGVQQFSAYYPSAGDSGAVGLIHNIYPFYGQYAQSIQAHGFGVQYPQMAQFPFLPQHYGSTGILSYPSSVAVPTNSAVSVTGTATTTTTPTTSTGVTATVAGSSQASQAASEQNSTSTKMQNMQG* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01529 287 Coils Coil 282 287 - -
Phac10g01529 287 MobiDBLite consensus disorder prediction 265 287 - -
Phac10g01529 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Phac10g01529 287 SUPERFAMILY RNA-binding domain, RBD 12 109 IPR035979 GO:0003676
Phac10g01529 287 Gene3D - 1 117 IPR012677 -
Phac10g01529 287 FunFam RNA-binding protein 24-B isoform X1 11 117 - -
Phac10g01529 287 CDD RRM_RBM24_RBM38_like 24 99 - -
Phac10g01529 287 PANTHER BOULE-RELATED 9 283 - -
Phac10g01529 287 SMART rrm1_1 25 97 IPR000504 GO:0003723
Phac10g01529 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01529 Phac-Chr10 38509335 38512389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01529 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 3.20e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01529 - - pvu:PHAVU_010G118600g 524.242