Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01528 ATGTCTCAACAAAGGCAAGCTCAGATGGTAGGTGGTAACAACCAGGAGCAATATAATGACACAACTTTTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAAAGGGACACAATGAGGAGGTACTTTGAGCAATTTGGAGAGATCTTGGAGGCTGTTGTGATCACAGACAAGAACACTGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGAGGCGGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGGAGGAGGGCTAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAACCGACCAGCAACTTTTCAGCATGGTGCAGGACGGTTCAGGCCTCCACCTGTACTGGTGACATCACCTGCTTATCATGGTTCTTCATCTACTACAACATTTTCCCATCAACCCCCTAGGCAATACACATTTCCTTATTCGGCTTACGGATATTCTGGATATTCTCAAGACACCTTGTATCCTACGAACTACTATAATGTCTATGGAGTTCAGCAATTTTCAGCTTACTACCCATCTTATTCAGGCTCATGGTTTTGGGGTTCAATACCCACAAATGGCACAGTTTCCATTTTTGCCTCAGCATTATGGCTCCACTGGGATATTGTCATATCCTTCTTCAGTAGCAGTGCCAACTAA 672 0.4479 MSQQRQAQMVGGNNQEQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPATFQHGAGRFRPPPVLVTSPAYHGSSSTTTFSHQPPRQYTFPYSAYGYSGYSQDTLYPTNYYNVYGVQQFSAYYPSYSGSWFWGSIPTNGTVSIFASALWLHWDIVISFFSSSAN* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01528 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Phac10g01528 223 Gene3D - 1 117 IPR012677 -
Phac10g01528 223 FunFam RNA-binding protein 24-B isoform X1 11 117 - -
Phac10g01528 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Phac10g01528 223 SUPERFAMILY RNA-binding domain, RBD 12 109 IPR035979 GO:0003676
Phac10g01528 223 CDD RRM_RBM24_RBM38_like 24 99 - -
Phac10g01528 223 PANTHER BOULE-RELATED 9 191 - -
Phac10g01528 223 SMART rrm1_1 25 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01528 Phac-Chr10 38509335 38512389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01528 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 2.82e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01528 - - pvu:PHAVU_010G118600g 387.497