Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01516 ATGGAAGAACTAATCATCTCTCCTTCCTCATCCTCCTCTTTGGTCTCTCAACCCCAAGAAAACCCAATCCCAGCACCATCCCTTCAACAAAAACTCCAATTTCTCCTCCAAAGCCAACCCGATTGGTGGGTCTACGCCATTTTCTGGCAGGCTTCACACGACGACAATGGCAACCTTTACCTGTCCTTCGGAGAAGGTCATTTCCAAGGCACCAAAGAAACTTCCCCAAAATTCCCAAGCCCCATTTCCACCAAGAAATTCACCAAAACTCCTACAACAGAAAACATCAACGACGCCGAGTGGTTCTACGTCATGTCGTTGACTCGCACGTTTACCGTCACCAATTCTTCTTCTTCAACCTCTCCCACTCCTTCTTCACTACTTGGCAAGTCTTTTGCTTTGGGATCCGTGCTGTGGCTGAACAACAAGCAGGAGCTCCAATTCTACAAGTGCGACAGATCCAACGAGGCAAACTTGCACGGGATCCAAACGTTGATCTCCATCCCCACACAAGACGGTGTCGTCGAAATGGGATCCTACGACAGCATCAAACAAAACTGGAACCTCGTCCAACATGTGAAGTCCCTCTTCCAACACCTCCCAGATCCGCTTCCCGTTCAAGTCCTCAACGACAATACCATCTCCTTCGCTGACATCGGCTTCGTCGCCGGAACCCAAGAAACCAAAAAGCGAAAACAAGCCCAAACACCACCCAATAACAAAAAAGACATCTACGTAGACTCCGAACACTCCGATTCGGATTGTCCAATGTTGCCAACCACAACAACCCCGACAGCCTCGGAGCCCAAAAAACGAGGCAGAAAACCTGTTATCGGCCGCGAGACACCAATGAACCACGTGGAGGCTGAGCGGCAACGGAGGGAGAAGCTGAACCACCGCTTCTACGCGCTACGCGCGGTGGTTCCGAACGTTTCGAGGATGGATAAGGCTTCGCTGCTGTCCGATGCTGTGACTTACATCAACGAGCTCAAAGCGAAGATTGAGTACTTGGAATCGCAGCAACAACGAGAAGGTAATAAAAGGGTCAAGACAGAAATGATGGATACCATGGATAATCAGAGCACCACCACCACCACCTCCACCATCGTAGACCAAAGTAGGCCTGGTGCTGGAGGCCCAGGCCCATTTGGTCTCGAGATCGATGTGAAGATCATGGGGCCCGATGCCATGGTGAGGGTGCAATCCGAAAATGCGAACCACCCCGGGGCGAGGCTAATGGGTGCATTGAGAGACCTAGAGTTTCAGGTTCATCACGCTAGCATGTCGTGCGTTAACGATCTCATGCTTCAGGACGTGGTGATTAATGTCCCTAATGGAATGAGGAGCGAAGAGGGTCTTAAATCTGCCATTCTCATGAGGTTGGATCAGTGA 1392 0.5065 MEELIISPSSSSSLVSQPQENPIPAPSLQQKLQFLLQSQPDWWVYAIFWQASHDDNGNLYLSFGEGHFQGTKETSPKFPSPISTKKFTKTPTTENINDAEWFYVMSLTRTFTVTNSSSSTSPTPSSLLGKSFALGSVLWLNNKQELQFYKCDRSNEANLHGIQTLISIPTQDGVVEMGSYDSIKQNWNLVQHVKSLFQHLPDPLPVQVLNDNTISFADIGFVAGTQETKKRKQAQTPPNNKKDIYVDSEHSDSDCPMLPTTTTPTASEPKKRGRKPVIGRETPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVTYINELKAKIEYLESQQQREGNKRVKTEMMDTMDNQSTTTTTSTIVDQSRPGAGGPGPFGLEIDVKIMGPDAMVRVQSENANHPGARLMGALRDLEFQVHHASMSCVNDLMLQDVVINVPNGMRSEEGLKSAILMRLDQ* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01516 463 Gene3D - 279 346 IPR036638 GO:0046983
Phac10g01516 463 MobiDBLite consensus disorder prediction 1 22 - -
Phac10g01516 463 CDD bHLH_AtAIB_like 279 355 - -
Phac10g01516 463 MobiDBLite consensus disorder prediction 358 381 - -
Phac10g01516 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 281 330 IPR011598 GO:0046983
Phac10g01516 463 Coils Coil 327 347 - -
Phac10g01516 463 Pfam Helix-loop-helix DNA-binding domain 285 330 IPR011598 GO:0046983
Phac10g01516 463 MobiDBLite consensus disorder prediction 358 373 - -
Phac10g01516 463 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 28 197 IPR025610 -
Phac10g01516 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 343 IPR036638 GO:0046983
Phac10g01516 463 MobiDBLite consensus disorder prediction 228 242 - -
Phac10g01516 463 SMART finulus 287 336 IPR011598 GO:0046983
Phac10g01516 463 MobiDBLite consensus disorder prediction 227 292 - -
Phac10g01516 463 MobiDBLite consensus disorder prediction 268 292 - -
Phac10g01516 463 PANTHER MYC 18 460 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01516 Phac-Chr10 38390293 38392684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01516 24 461 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 36.465 8.02e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac10g01516 bHLH-MYC_N 1.8e-45 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01516 - K13422 var:108347008 776.548