Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01499 ATGATGATGGTTTTAGATATTTTATCTTCTAATGCTGCTGGAATTGCCATTTCTCAAACTTTAGAGATCATTGCTGAGTTTCTAGTTAATGTTAACGATGTTCTTGTGAAAAAGGATAGTTTTAAAGAACTTGGTGCTTACATTGAAAGAATTAAGCCTATCTTAGAAGAGTTGAAGAAAGGAAAAGTCAGTGATTCTGAGTCATTCAACCAAGCCATTGAGACCATGAACAAAGAAATTAAAGATGCGAAGCTACTAGCTCTAGAGTGCAGCAAGAAGAGCAAGGTTTATCTGTTAGTGAACTCCAGGTCCATTGCTAAGAAGTTAGATGATCACTCAAAACGGCTGAGTTGGGCACTTAGTCTTATTCCTTTAGCCACAACAGGTCTTTCTTCAGGAATTGTTGAAGATATTGAAAAGCTATGTGACAGCATGCAGACATCTGGATTTAAGGCAGCTCTAGATGAAGAAGCCATTTTAGAGAAAATTTACTCAGGGATTAGGGAAAACAATGTTGATCGTTCCTATGCAAACAACTTGCTACTTCTCATTGCTGAGACGGTTGGGATTAGGAATGAGAGGTCAACAATAAAGTTGGAACTTGAAGAGTTTAAGAGTGAAATTGAAAAGGCACGCGATAGGAAGGAGTTAGCTGAAGCTATGCAAATGGATCAAATCATTGCTTTGTTGGAAAGGGCTGATGCAGCTTCATCACCTAGGGACAAGGAACTCAAATACTTTGCCAAACGCCGATCTTTGGGTAGTCAAATATTGGAGCCTTTGCAGTCATTTTATTGCACCATCACCCAGGATGTTATGGTGGATCCTGTTGAAATTTCATCAGGACAGACATTTGAGAGAAGTGCCATAGAAAAGTGGTTTGCAGAAGGAAATAAATTGTGCCCCTTGACCTTGATTCCCCTAGACACATCAATTTTGAGACCTAACAAACAGTTGAAACAATCCATACAAGAGTGGAAGGATAGAAATATAATGATTACAATTGCTACATTGAAAGAAAAAATCCTGTCTGGTAATGATGAGGAAGTGCTGCTTGATCTGAAAAATCTTCAGAATTTGTGTGAAGAAAAAGAACAGCACAGGGAATGGGTTATTCTGGAGAATTACATCCCAACTCTCATCCAAATTCTATCAAGAAATCGTGACATAAAAAAACATTCTCTTGTCATCCTTGGCATGCTGGCAAAGGATAGTGAAGAAGCTAAGGTAAAAATTTCAACGGCTGATGGTGCAATTGAATCAATTGTCCGGTCTCTTGGACGCAGTACAGAGGTAAGGAAGTTAGCAGTGGCGTTACTGCTTGAATTGTCCAAATATGATTTGGCACGAGAACACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGTGGAGATGACAATCAAGCTGCTAGAGATGCAACGGAGCTATTGGAGAATCTTGCATACTCTGATCAGAATGTTATACAGATGGCAAAAGCAAATTATTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGAAGATGTAAAGATGATTATGGCAAAAAATTTAGCAGAAATGGAGTTAACTGACCATAATAGAGAGTCCTTGTTTGATGGTGGTGTACTGGTTCCTCTTCTTCACATGTTCTCACAAAATGATGTTCTGGTGAAAGCAGAAGCTATTAAAGCTCTTAAGAATTTATCCAATTCAAAGAAAAATGGTCAGGAAATGATAAGACAGGGGGCTGCACGGCCGCTACTTAACCTCCTTTTCAATCAAAGCATACCCACTACAAGTTTGTGGGGAGATCTATCAACCATAATCGTGCAACTTGCTGCATCAACTGTCTCTCAGGACGCTCAAACACCTGTTTTATTACTCGATTCTGATGATGATGTTTTCAATCTCTTCAATTTAGTTAGTGTCACAGAGCCTGTTGTGCAACAGAACATTATCCAGACCTTTTATGCCTTGTGTCAAACACCCTCGGCTTCGTTTATCAGAACCAAACTGAAAGAGTACCCAGCTGTTCCAAAATTGGTTGAACTGTGTGAGAATGAAAACCAAAACCTACGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTGGAGAATTGTGATGAAGCCATCATACAGGAGAACGTGAACCAGAAATGCATCAATACTCTACTTCGGATTATAAAAACTTCATCTGATGAAGAGGAAATACTTTCTGCCATGGGATTGATATGCTATCTTCCAGAAATTGACCACATAACTCAATGGCTTTTGGATGGTGGGGCGCTGCAAATCATTAAAAATTATGTCCAACAAAGAAGAAATTTAGTTGAGAATGCCATTGGTGCCCTTCGTCGTTTTACTGTTCCAACAAACTTGGAATGGCAAAAAAGTGCAGCTGAAACAGGGATCATAACTGTTTTGGTCCAACTGCTTGAAAATGGAACCACCTTGACAAAACAACGCGTGGCACAGTGTCTTGCTCAATTTTCTAGGAGCTCATTTAAGCTGAGCAGGCCAATACCGAAGCGCAAAGGACTATGGTGCTTCTCAGCTCCTGCTGATATTGGCTGCATGGTTCATGGAGGAATATGCTCAGTCAAATCATCATTTTGTCTTTTGGACGCCAACGCAGTGGCACCACTCACAAGGACTCTACAGGAATCTGATCCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTTTTAACATTGATAGAAGATGAAAGACTGCAGAGTGGTAGTGCTGTGCTTGCAGAAGCAAAGGCCATACCACTTATAATCAGATATCTTGGCTCCCCCTCCCCTGGCTTGCTGGAGAAGTCTCTAAATGCTTTGGAAAGGATTTTTCGGCTACCCGAATTCAAACAAATGTATGGACCCTCAGCTCAAATGGCTCTAGTTGATTTGACTCAGAGGGGTAATGGTAGTGTTAGATCCACATCAGCTAGAATATTGGTACATTTGAACGTGCTTCATGATCAATCTTCATTTTTCTAA 2994 0.4021 MMMVLDILSSNAAGIAISQTLEIIAEFLVNVNDVLVKKDSFKELGAYIERIKPILEELKKGKVSDSESFNQAIETMNKEIKDAKLLALECSKKSKVYLLVNSRSIAKKLDDHSKRLSWALSLIPLATTGLSSGIVEDIEKLCDSMQTSGFKAALDEEAILEKIYSGIRENNVDRSYANNLLLLIAETVGIRNERSTIKLELEEFKSEIEKARDRKELAEAMQMDQIIALLERADAASSPRDKELKYFAKRRSLGSQILEPLQSFYCTITQDVMVDPVEISSGQTFERSAIEKWFAEGNKLCPLTLIPLDTSILRPNKQLKQSIQEWKDRNIMITIATLKEKILSGNDEEVLLDLKNLQNLCEEKEQHREWVILENYIPTLIQILSRNRDIKKHSLVILGMLAKDSEEAKVKISTADGAIESIVRSLGRSTEVRKLAVALLLELSKYDLAREHIGKVQGCILLLVTMSSGDDNQAARDATELLENLAYSDQNVIQMAKANYFKHLLQRLSTGPEDVKMIMAKNLAEMELTDHNRESLFDGGVLVPLLHMFSQNDVLVKAEAIKALKNLSNSKKNGQEMIRQGAARPLLNLLFNQSIPTTSLWGDLSTIIVQLAASTVSQDAQTPVLLLDSDDDVFNLFNLVSVTEPVVQQNIIQTFYALCQTPSASFIRTKLKEYPAVPKLVELCENENQNLRASAVKLFSCLVENCDEAIIQENVNQKCINTLLRIIKTSSDEEEILSAMGLICYLPEIDHITQWLLDGGALQIIKNYVQQRRNLVENAIGALRRFTVPTNLEWQKSAAETGIITVLVQLLENGTTLTKQRVAQCLAQFSRSSFKLSRPIPKRKGLWCFSAPADIGCMVHGGICSVKSSFCLLDANAVAPLTRTLQESDPGVCEASLDALLTLIEDERLQSGSAVLAEAKAIPLIIRYLGSPSPGLLEKSLNALERIFRLPEFKQMYGPSAQMALVDLTQRGNGSVRSTSARILVHLNVLHDQSSFF* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01499 997 Gene3D - 16 127 IPR036537 GO:0007166
Phac10g01499 997 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 336 IPR013083 -
Phac10g01499 997 Coils Coil 194 221 - -
Phac10g01499 997 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Phac10g01499 997 Gene3D - 337 615 IPR011989 -
Phac10g01499 997 Gene3D - 861 995 IPR011989 -
Phac10g01499 997 SMART arm_5 364 403 IPR000225 GO:0005515
Phac10g01499 997 SMART arm_5 909 949 IPR000225 GO:0005515
Phac10g01499 997 SMART arm_5 446 487 IPR000225 GO:0005515
Phac10g01499 997 SMART arm_5 529 569 IPR000225 GO:0005515
Phac10g01499 997 SMART arm_5 865 905 IPR000225 GO:0005515
Phac10g01499 997 SMART arm_5 570 621 IPR000225 GO:0005515
Phac10g01499 997 SMART arm_5 407 445 IPR000225 GO:0005515
Phac10g01499 997 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Phac10g01499 997 Gene3D - 616 838 IPR011989 -
Phac10g01499 997 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
Phac10g01499 997 CDD MLKL_NTD 38 128 - -
Phac10g01499 997 SUPERFAMILY RING/U-box 251 330 - -
Phac10g01499 997 SUPERFAMILY ARM repeat 334 987 IPR016024 -
Phac10g01499 997 CDD RING-Ubox_PUB 264 313 IPR045210 -
Phac10g01499 997 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 997 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01499 Phac-Chr10 38098877 38106014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01499 262 997 U-box Gene Family AT1G76390 28.951 7.47e-61 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01499 - - gmx:100799969 1602.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01499 10 38098877 38106014 Phac10g01499 10 38098877 38106014 ECH