Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac10g01495 | ATGATTTTGTTCCTCATTCAACGCCTCTACAGCTTCATGTGCATCAGCCCTCACTTATATTCAGGTTTTGCTTTTGTCTATTACGAGGATGAGCGTGATGCAGAAGAAGCAATTCGTGCACTTGACAATGTTCCATTTGGTCACGAAAAGCGAAGGCTGTCTGTGGAGTGGGCTAGGGGTGAACGAGGACGTCATCGTGATGGATCAAAGGCAAACCAGAGGCCAACAAAAACCTTGTTTGTGATTAACTTTGATCCAATCCGAACTAGAGTTCGTGATATAGAAAAACATTTTGAACCTTATGGAAATGTTCTTCATGTCCGAATTCGACGGAACTTTGCATTTGTGCAGTTTGAGACACAAGAAGATGCTACTAAAGCTTTAGAGTGTACAAATATGAGTAAGATCCTGGACAGGGTGGTGTCTGTGGAGTATGCTTTGAGGGATGATGGTGAAAGGGGTGACAATTATGATAGTCCTAGACGAGGAGGTTATGATAGATCACCCAGTCCAGTTTATCACAGGCGTCCAAGCCCCGACTATGGTCGTCCACGCAGTCCTGTCTATGATAGGTATAATGGTGGACCAGACAGACGGGTGAGTCCTGATTATGGCAGGGGCATTCCTGATTATGGCAGGCGCAGGAGTCCGGATTATGGAAAGCCCAGGAGTCCTGATTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGTCCTGGTTATGGGAAACCCAGGAGTCCTGGTTATGGGAAGCCCAGGAGTCCTGATAATGGGAAGCCCAGGAGTCCTGATTATGGGAAGACAAGGAGTCCTGATTATGGGAAGCCCAGGAGTCCTGAATATGGTAGATATCGCAGCCCTTCTCCATTGCGAAGGTCTAGAACGTAA | 942 | 0.4745 | MILFLIQRLYSFMCISPHLYSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGYDRSPSPVYHRRPSPDYGRPRSPVYDRYNGGPDRRVSPDYGRGIPDYGRRRSPDYGKPRSPDYGKPRSPGYGKPRSPGYGKPRSPGYGKPRSPGYGKPRSPGYGKPRSPDNGKPRSPDYGKTRSPDYGKPRSPEYGRYRSPSPLRRSRT* | 314 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac10g01495 | 313 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 21 | 47 | IPR000504 | GO:0003723 | |
Phac10g01495 | 313 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 79 | 141 | IPR000504 | GO:0003723 | |
Phac10g01495 | 313 | MobiDBLite | consensus disorder prediction | 275 | 297 | - | - | |
Phac10g01495 | 313 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 23 | 92 | - | - | |
Phac10g01495 | 313 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 22 | 60 | IPR000504 | GO:0003723 | |
Phac10g01495 | 313 | Pfam | Cornifin (SPRR) family | 216 | 302 | - | - | |
Phac10g01495 | 313 | SMART | rrm1_1 | 78 | 144 | IPR000504 | GO:0003723 | |
Phac10g01495 | 313 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 77 | 148 | IPR000504 | GO:0003723 | |
Phac10g01495 | 313 | Gene3D | - | 17 | 71 | IPR012677 | - | |
Phac10g01495 | 313 | MobiDBLite | consensus disorder prediction | 150 | 313 | - | - | |
Phac10g01495 | 313 | SUPERFAMILY | RNA-binding domain, RBD | 20 | 151 | IPR035979 | GO:0003676 | |
Phac10g01495 | 313 | CDD | RRM2_AtRSp31_like | 78 | 147 | - | - | |
Phac10g01495 | 313 | FunFam | Serine/arginine-rich splicing factor RS31 | 69 | 159 | - | - | |
Phac10g01495 | 313 | Gene3D | - | 72 | 157 | IPR012677 | - | |
Phac10g01495 | 313 | MobiDBLite | consensus disorder prediction | 208 | 225 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac10g01495 | Phac-Chr10 | 38080201 | 38083757 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac10g01495 | 22 | 150 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 25.874 | 1.76e-07 | 50.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac10g01495 | K12893 | - | gmx:100797709 | 412.149 |