Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01495 ATGATTTTGTTCCTCATTCAACGCCTCTACAGCTTCATGTGCATCAGCCCTCACTTATATTCAGGTTTTGCTTTTGTCTATTACGAGGATGAGCGTGATGCAGAAGAAGCAATTCGTGCACTTGACAATGTTCCATTTGGTCACGAAAAGCGAAGGCTGTCTGTGGAGTGGGCTAGGGGTGAACGAGGACGTCATCGTGATGGATCAAAGGCAAACCAGAGGCCAACAAAAACCTTGTTTGTGATTAACTTTGATCCAATCCGAACTAGAGTTCGTGATATAGAAAAACATTTTGAACCTTATGGAAATGTTCTTCATGTCCGAATTCGACGGAACTTTGCATTTGTGCAGTTTGAGACACAAGAAGATGCTACTAAAGCTTTAGAGTGTACAAATATGAGTAAGATCCTGGACAGGGTGGTGTCTGTGGAGTATGCTTTGAGGGATGATGGTGAAAGGGGTGACAATTATGATAGTCCTAGACGAGGAGGTTATGATAGATCACCCAGTCCAGTTTATCACAGGCGTCCAAGCCCCGACTATGGTCGTCCACGCAGTCCTGTCTATGATAGGTATAATGGTGGACCAGACAGACGGGTGAGTCCTGATTATGGCAGGGGCATTCCTGATTATGGCAGGCGCAGGAGTCCGGATTATGGAAAGCCCAGGAGTCCTGATTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGTCCTGGTTATGGGAAACCCAGGAGTCCTGGTTATGGGAAGCCCAGGAGTCCTGATAATGGGAAGCCCAGGAGTCCTGATTATGGGAAGACAAGGAGTCCTGATTATGGGAAGCCCAGGAGTCCTGAATATGGTAGATATCGCAGCCCTTCTCCATTGCGAAGGTCTAGAACGTAA 942 0.4745 MILFLIQRLYSFMCISPHLYSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGYDRSPSPVYHRRPSPDYGRPRSPVYDRYNGGPDRRVSPDYGRGIPDYGRRRSPDYGKPRSPDYGKPRSPGYGKPRSPGYGKPRSPGYGKPRSPGYGKPRSPGYGKPRSPDNGKPRSPDYGKTRSPDYGKPRSPEYGRYRSPSPLRRSRT* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01495 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 47 IPR000504 GO:0003723
Phac10g01495 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 141 IPR000504 GO:0003723
Phac10g01495 313 MobiDBLite consensus disorder prediction 275 297 - -
Phac10g01495 313 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 23 92 - -
Phac10g01495 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 60 IPR000504 GO:0003723
Phac10g01495 313 Pfam Cornifin (SPRR) family 216 302 - -
Phac10g01495 313 SMART rrm1_1 78 144 IPR000504 GO:0003723
Phac10g01495 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 148 IPR000504 GO:0003723
Phac10g01495 313 Gene3D - 17 71 IPR012677 -
Phac10g01495 313 MobiDBLite consensus disorder prediction 150 313 - -
Phac10g01495 313 SUPERFAMILY RNA-binding domain, RBD 20 151 IPR035979 GO:0003676
Phac10g01495 313 CDD RRM2_AtRSp31_like 78 147 - -
Phac10g01495 313 FunFam Serine/arginine-rich splicing factor RS31 69 159 - -
Phac10g01495 313 Gene3D - 72 157 IPR012677 -
Phac10g01495 313 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01495 Phac-Chr10 38080201 38083757 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01495 22 150 Eukaryotic Initiation Factors Gene Family AT1G49760 25.874 1.76e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01495 K12893 - gmx:100797709 412.149