Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01493 ATGAGGCCGATTTTTGCTGGGAACTTGGAGTATGATACTCGTCAATCGGAGCTTGAACGGTTGTTTTCAAAGTATGGAAGGATTGACCGCGTGGATATGAAATCTGGTTTTGCTTTTGTCTATTACGAGGATGAGCGTGATGCAGAAGAAGCAATTCGTGCACTTGACAATGTTCCATTTGGTCACGAAAAGCGAAGGCTGTCTGTGGAGTGGGCTAGGGGTGAACGAGGACGTCATCGTGATGGATCAAAGGCAAACCAGAGGCCAACAAAAACCTTGTTTGTGATTAACTTTGATCCAATCCGAACTAGAGTTCGTGATATAGAAAAACATTTTGAACCTTATGGAAATGTTCTTCATGTCCGAATTCGACGGAACTTTGCATTTGTGCAGTTTGAGACACAAGAAGATGCTACTAAAGCTTTAGAGTGTACAAATATGAGTAAGATCCTGGACAGGGTGGTGTCTGTGGAGTATGCTTTGAGGGATGATGGTGAAAGGGGTGACAATTATGATAGTCCTAGACGAGGAGGTTATGATAGATCACCCAGTCCAGTTTATCACAGGCGTCCAAGCCCCGACTATGGTCGTCCACGCAGTCCTGTCTATGATAGGTATAATGGTGGACCAGACAGACGGGTGAGTCCTGATTATGGCAGGGGCATTCCTGATTATGGCAGGCGCAGGAGTCCGGATTATGGAAAGCCCAGGAGTCCTGATTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGTCCTGGTTATGGGAAACCCAGGAGTCCTGGTTATGGGAAGCCCAGGAGTCCTGATAATGGGAAGCCCAGGAGTCCTGATTATGGGAAGACAAGGAGTCCTGATTATGGGAAGCCCAGGAGTCCTGAATATGGTAGATATCGCAGCCCTTCTCCATTGCGAAGGTCTAGAACGTAA 984 0.4746 MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGYDRSPSPVYHRRPSPDYGRPRSPVYDRYNGGPDRRVSPDYGRGIPDYGRRRSPDYGKPRSPDYGKPRSPGYGKPRSPGYGKPRSPGYGKPRSPGYGKPRSPGYGKPRSPDNGKPRSPDYGKTRSPDYGKPRSPEYGRYRSPSPLRRSRT* 328
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01493 327 MobiDBLite consensus disorder prediction 164 327 - -
Phac10g01493 327 CDD RRM2_AtRSp31_like 92 161 - -
Phac10g01493 327 SUPERFAMILY RNA-binding domain, RBD 3 165 IPR035979 GO:0003676
Phac10g01493 327 SMART rrm1_1 92 158 IPR000504 GO:0003723
Phac10g01493 327 SMART rrm1_1 3 70 IPR000504 GO:0003723
Phac10g01493 327 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 310 - -
Phac10g01493 327 MobiDBLite consensus disorder prediction 222 239 - -
Phac10g01493 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Phac10g01493 327 MobiDBLite consensus disorder prediction 289 311 - -
Phac10g01493 327 Gene3D - 84 173 IPR012677 -
Phac10g01493 327 Gene3D - 1 83 IPR012677 -
Phac10g01493 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Phac10g01493 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Phac10g01493 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Phac10g01493 327 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
Phac10g01493 327 Pfam Cornifin (SPRR) family 230 316 - -
Phac10g01493 327 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phac10g01493 Phac-Chr10 38080201 38083757 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01493 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 23.626 3.63e-09 56.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01493 K12893 - gmx:100797709 479.559