Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01491 ATGCTGATGTCTTTGATAATCATCTATGCCTCTAATACTAGTTTTGTCGCAGGTTTTGCTTTTGTCTATTACGAGGATGAGCGTGATGCAGAAGAAGCAATTCGTGCACTTGACAATGTTCCATTTGGTCACGAAAAGCGAAGGCTGTCTGTGGAGTGGGCTAGGGGTGAACGAGGACGTCATCGTGATGGATCAAAGGCAAACCAGAGGCCAACAAAAACCTTGTTTGTGATTAACTTTGATCCAATCCGAACTAGAGTTCGTGATATAGAAAAACATTTTGAACCTTATGGAAATGTTCTTCATGTCCGAATTCGACGGAACTTTGCATTTGTGCAGTTTGAGACACAAGAAGATGCTACTAAAGCTTTAGAGTGTACAAATATGAGTAAGATCCTGGACAGGGTGGTGTCTGTGGAGTATGCTTTGAGGGATGATGGTGAAAGGGGTGACAATTATGATAGTCCTAGACGAGGAGGTTATGATAGATCACCCAGTCCAGTTTATCACAGGCGTCCAAGCCCCGACTATGGTCGTCCACGCAGTCCTGTCTATGATAGGTATAATGGTGGACCAGACAGACGGGTGAGTCCTGATTATGGCAGGGGCATTCCTGATTATGGCAGGCGCAGGAGTCCGGATTATGGAAAGCCCAGGAGTCCTGATTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGTCCTGGTTATGGGAAACCCAGGAGTCCTGGTTATGGGAAGCCCAGGAGTCCTGATAATGGGAAGCCCAGGAGTCCTGATTATGGGAAGACAAGGAGTCCTGATTATGGGAAGCCCAGGAGTCCTGAATATGGTAGATATCGCAGCCCTTCTCCATTGCGAAGGTCTAGAACGTAA 930 0.472 MLMSLIIIYASNTSFVAGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGYDRSPSPVYHRRPSPDYGRPRSPVYDRYNGGPDRRVSPDYGRGIPDYGRRRSPDYGKPRSPDYGKPRSPGYGKPRSPGYGKPRSPGYGKPRSPGYGKPRSPGYGKPRSPDNGKPRSPDYGKTRSPDYGKPRSPEYGRYRSPSPLRRSRT* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01491 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 56 IPR000504 GO:0003723
Phac10g01491 309 SMART rrm1_1 74 140 IPR000504 GO:0003723
Phac10g01491 309 FunFam Serine/arginine-rich splicing factor RS31 65 155 - -
Phac10g01491 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 144 IPR000504 GO:0003723
Phac10g01491 309 MobiDBLite consensus disorder prediction 271 293 - -
Phac10g01491 309 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 19 88 - -
Phac10g01491 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 137 IPR000504 GO:0003723
Phac10g01491 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 43 IPR000504 GO:0003723
Phac10g01491 309 MobiDBLite consensus disorder prediction 146 309 - -
Phac10g01491 309 CDD RRM2_AtRSp31_like 74 143 - -
Phac10g01491 309 MobiDBLite consensus disorder prediction 204 221 - -
Phac10g01491 309 Gene3D - 67 152 IPR012677 -
Phac10g01491 309 Gene3D - 3 66 IPR012677 -
Phac10g01491 309 Pfam Cornifin (SPRR) family 212 298 - -
Phac10g01491 309 SUPERFAMILY RNA-binding domain, RBD 4 147 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01491 Phac-Chr10 38080201 38083757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01491 18 146 Eukaryotic Initiation Factors Gene Family AT1G49760 25.874 2.24e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01491 K12893 - gmx:100797709 410.994