Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01458 ATGATAGTTAAGCGGACAATGAAAGCCGAAGCGCCGAACCTGAAACGATGTAAGATTGACGGTACCGAGAATGCGATTCAGAAGAAGCGTAGGGTGAACGGGTTGTACTCGCTGGGAGTGCCGGGGGATGCTGAATATTTCAGCAGCGGTTCTGGTTCTTGGAGCAGTGAAGGATCGTATTGGGGTGGTGGTGGTGAGGTTCAGTCCAATTCGAATTCTTTTATGTTCAACCGGAAAATGGTGAAGGAGGCACGTCGTCCTCCGCTTCTGCGGTCCTCTCGTGGACGCGTCCAGAAGCTTCCGTCGAGGTTCAATGACTCGGTTCTTGACGCGGACGGAGACTCGAGCTTTGAAGATAATGATAAGAGTTATGTGGAGGACGGAAGGGGTGGCATTGGTGTGAGTGTGGAGAGGAGTGATAGTGTGTGTTGTTCGTCTAGTGTTGGGAGAAGGACTGGCGTTATGGCTGAGAGTAATACGTCTGGGATTAGTTTCGAGGGTGTTGACCAAAAATCCAATGGGGAGAAGAGGAATGAGGTTTTCAAGCTGGAGGATTTTTCTTTGGGGGATATAGTTTGGGCTAAGTGTGGGAAGAGGTATCCGGCTTGGCCTGCTGTAGTGATTGATCCTGCCTTGGAAGCTCCAGAGTCCGTACTCAGCTGTTGTATTCCCGGCGCGCTCTGCGTGATGTTTTTTGGTTATTCAAAGAACGGAACTCAAAGGGACTATGCGTGGGTGAAGCAGGGAATGGTATTCCCCTTCTCGGAGTTCTTGGACAGGTTTCAGGGGCAGACTCGGTTGTACAAGAGCAAACCTAGTGACTTCCGCATGGCCCTGGAGGAGGCAATGCTGGCAGAAGATGGTGTTCTGGAATCACATTTGGGAAGAGTGGAAGTACCTGATGCAGAAGCTCATCCTGCTCGACTTATGGAGGCTACCTGCTATTATGTTGATGAAGAATACTACGGCCAGGAACAGGTTACAGGGTACTGTGCTGGCTGTGGTCTGATGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAATTGTGCACCACGATTTTATTGTAAACATTGTACCAAGCTACGAAAATCAAAACAATATTGTGGCATTTGCAAAAGGACTTGGCATCATTCAGATGGTGGGAATTGGGTGTGTTGCGATGGATGTAATGTGTGGGTGCATGCTGAGTGTGATAAAATAACCAGCAGACTTTTCAAGGATCTGGAAAATACAGATTACTACTGTCCAGATTGCAAGGGAAAATTCATTAGTAATTTACCAGCATCACAAACATACAAGCCGAGAATCAAATCAATAGAGAATAGCCAAAAATCTATGATACCCGATAGTGTATTGGTGGTGTGCAACGGCATGGAAGGAATATATATCCCAAAGCTTCATCTAGTCATGTGCAATTGTGGCTATTGTGGTTCAAGGAAGCAGACACTCAGTGAATGGGAAAAACATACTGGTTGCAGAGCGAAAAAATGGAAACATAGTGTGAAAGTGAAAAGTACAATGCTACCTCTGGAAAAATGGATGGCTGAGCACATTCCACTAGAGGGAATAACCCAGCAGTTAGATCAGCAGCAGGTACTTGCTTTCTTGCAAGAGAAGTACGAGCCTGTTAATGCAAAATGGACAACGGAAAGGTGTGCTGTTTGCAGATGGGTTGAAGATTGGGAAGATAATAAAATTATTATTTGCAACAGATGTCAAATAGCTGTCCACCAAGAGTGCTATGGGGCAAAAAATGTTAAGGATTTAACTTCTTGGGTTTGCAGAGTATGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAAAAGGTGGTGCTTTAAAGCCAACTGATGTTGAAATGTTGTGGGTTCATGTAACATGTGCTTGGTTTCGACCTCAAGTTGTTTTCCAAAACCATGAGGCCATGGAACCTGCTGTGGGAATCCTTAAAATTCCTCCTAATTCGTTTGTGAAGTTGCATTCCATGGAGAAGAATGGGTCTCAAATAACGAAGAAGCTAATATATTGTTCAGTTCACAGGGTCCCAAATCCAGATTCAGTACTAGTCATACACACACCCCTGGGGATTTTCTCTCCCAGAACTTCCCTTCAAAATCAGAAAGGATGCTTCAGGGGATCAAGGCTAATTTCATCAAAGAATATAGAGCTTATTGAATCTTCAACCACTGAAAATGAGGTAGTTGAGCCACTGTCTGCTGCTAGATGTCGTGTGTACCGTAGGTCTCCTAATAAGAGAGCCAATGAGCCAATAATTCACTGGCCCAGGGGACCCACCCGTCATTCCCTAGATGCAATAACTCTGTTGAATGGCTTTAAGGCTGGTGATGAATCTAAAGTATTCACTTCTTTCAAGGAACGTCTTCACCATTTACGGGAAATGGAAAAATTGAGAGTTTGCTTTGGAAAATCAGGCATTCATGGATGGGGCCTCTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATCGTGGTGTGCATGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCAAAATATCGTTCGGAAGGCAAAGATTGCTATCTGTTCAAGATTAGCGAGGAAGTGGTAGTTGATGCAACAAACACGGGCAATATTGCACGCTTAATAAACCACTCTTGCATGCCAAACTGCTACGCAAGGATAATGAGTCTGGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGACTAATGTTTCTGCTGGTGAAGAACTAACGTATGACTACTTGTTCGATCCAGATGAGCGGGATGACCTGAAAGTTCCCTGCCTTTGCAAAGCCCCCAATTGTAGGAGATTTATGAATTAG 2853 0.4497 MIVKRTMKAEAPNLKRCKIDGTENAIQKKRRVNGLYSLGVPGDAEYFSSGSGSWSSEGSYWGGGGEVQSNSNSFMFNRKMVKEARRPPLLRSSRGRVQKLPSRFNDSVLDADGDSSFEDNDKSYVEDGRGGIGVSVERSDSVCCSSSVGRRTGVMAESNTSGISFEGVDQKSNGEKRNEVFKLEDFSLGDIVWAKCGKRYPAWPAVVIDPALEAPESVLSCCIPGALCVMFFGYSKNGTQRDYAWVKQGMVFPFSEFLDRFQGQTRLYKSKPSDFRMALEEAMLAEDGVLESHLGRVEVPDAEAHPARLMEATCYYVDEEYYGQEQVTGYCAGCGLMLPCKTMKKIKDSNCAPRFYCKHCTKLRKSKQYCGICKRTWHHSDGGNWVCCDGCNVWVHAECDKITSRLFKDLENTDYYCPDCKGKFISNLPASQTYKPRIKSIENSQKSMIPDSVLVVCNGMEGIYIPKLHLVMCNCGYCGSRKQTLSEWEKHTGCRAKKWKHSVKVKSTMLPLEKWMAEHIPLEGITQQLDQQQVLAFLQEKYEPVNAKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGAKNVKDLTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPQVVFQNHEAMEPAVGILKIPPNSFVKLHSMEKNGSQITKKLIYCSVHRVPNPDSVLVIHTPLGIFSPRTSLQNQKGCFRGSRLISSKNIELIESSTTENEVVEPLSAARCRVYRRSPNKRANEPIIHWPRGPTRHSLDAITLLNGFKAGDESKVFTSFKERLHHLREMEKLRVCFGKSGIHGWGLFARRDIQEGEMVVEYRGVHVRRSVADLREAKYRSEGKDCYLFKISEEVVVDATNTGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDERDDLKVPCLCKAPNCRRFMN* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01458 950 CDD PHD_ATX3_4_5_like 553 599 IPR042011 -
Phac10g01458 950 SMART PWWP_4 186 255 IPR000313 -
Phac10g01458 950 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 540 614 IPR013083 -
Phac10g01458 950 SUPERFAMILY FYVE/PHD zinc finger 552 616 IPR011011 -
Phac10g01458 950 Pfam PHD-finger 566 600 - -
Phac10g01458 950 CDD PWWP_AtATX3-like 189 288 - -
Phac10g01458 950 SMART PostSET_3 934 950 IPR003616 -
Phac10g01458 950 Pfam PHD-finger 369 422 IPR019787 -
Phac10g01458 950 SUPERFAMILY FYVE/PHD zinc finger 367 423 IPR011011 -
Phac10g01458 950 SUPERFAMILY SET domain 806 946 IPR046341 -
Phac10g01458 950 SMART set_7 808 931 IPR001214 GO:0005515
Phac10g01458 950 SUPERFAMILY Tudor/PWWP/MBT 181 298 - -
Phac10g01458 950 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 950 IPR025780 -
Phac10g01458 950 Pfam SET domain 819 924 IPR001214 GO:0005515
Phac10g01458 950 CDD SET_SETD1-like 797 946 - -
Phac10g01458 950 ProSiteProfiles PWWP domain profile. 188 257 IPR000313 -
Phac10g01458 950 FunFam Histone-lysine N-methyltransferase 783 950 - -
Phac10g01458 950 Gene3D SET domain 780 950 IPR046341 -
Phac10g01458 950 ProSiteProfiles Zinc finger PHD-type profile. 367 423 IPR019787 -
Phac10g01458 950 ProSiteProfiles Extended PHD (ePHD) domain profile. 605 663 IPR034732 -
Phac10g01458 950 Gene3D - 177 292 - -
Phac10g01458 950 CDD PHD_TCF19_like 370 420 - -
Phac10g01458 950 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 424 IPR013083 -
Phac10g01458 950 ProSiteProfiles Zinc finger PHD-type profile. 551 602 IPR019787 -
Phac10g01458 950 ProSiteProfiles SET domain profile. 808 925 IPR001214 GO:0005515
Phac10g01458 950 ProSitePatterns Zinc finger PHD-type signature. 554 599 IPR019786 -
Phac10g01458 950 Pfam PWWP domain 189 285 IPR000313 -
Phac10g01458 950 PANTHER PHD FINGER PROTEINS 81 401 - -
Phac10g01458 950 ProSiteProfiles Post-SET domain profile. 934 950 IPR003616 -
Phac10g01458 950 SMART PHD_3 369 421 IPR001965 -
Phac10g01458 950 SMART PHD_3 553 600 IPR001965 -
Phac10g01458 950 Pfam PHD-zinc-finger like domain 607 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01458 Phac-Chr10 37655808 37664424 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01458 333 406 EF-hand Containing Proteins AT5G28340 52.703 4.79e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac10g01458 SET 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01458 - - gmx:100797346 1712.58