Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01456 ATGATAGTTAAGCGGACAATGAAAGCCGAAGCGCCGAACCTGAAACGATGTAAGATTGACGGTACCGAGAATGCGATTCAGAAGAAGCGTAGGGTGAACGGGTTGTACTCGCTGGGAGTGCCGGGGGATGCTGAATATTTCAGCAGCGGTTCTGGTTCTTGGAGCAGTGAAGGATCGTATTGGGGTGGTGGTGGTGAGGTTCAGTCCAATTCGAATTCTTTTATGTTCAACCGGAAAATGGTGAAGGAGGCACGTCGTCCTCCGCTTCTGCGGTCCTCTCGTGGACGCGTCCAGAAGCTTCCGTCGAGGTTCAATGACTCGGTTCTTGACGCGGACGGAGACTCGAGCTTTGAAGATAATGATAAGAGTTATGTGGAGGACGGAAGGGGTGGCATTGGTGTGAGTGTGGAGAGGAGTGATAGTGTGTGTTGTTCGTCTAGTGTTGGGAGAAGGACTGGCGTTATGGCTGAGAGTAATACGTCTGGGATTAGTTTCGAGGGTGTTGACCAAAAATCCAATGGGGAGAAGAGGAATGAGGTTTTCAAGCTGGAGGATTTTTCTTTGGGGGATATAGTTTGGGCTAAGTGTGGGAAGAGGTATCCGGCTTGGCCTGCTGTAGTGATTGATCCTGCCTTGGAAGCTCCAGAGTCCGTACTCAGCTGTTGTATTCCCGGCGCGCTCTGCGTGATGTTTTTTGGTTATTCAAAGAACGGAACTCAAAGGGACTATGCGTGGGTGAAGCAGGGAATGGTATTCCCCTTCTCGGAGTTCTTGGACAGGTTTCAGGGGCAGACTCGGTTGTACAAGAGCAAACCTAGTGACTTCCGCATGGCCCTGGAGGAGGCAATGCTGGCAGAAGATGGTGTTCTGGAATCACATTTGGGAAGAGTGGAAGTACCTGATGCAGAAGCTCATCCTGCTCGACTTATGGAGGCTACCTGCTATTATGTTGATGAAGAATACTACGGCCAGGAACAGGTTACAGGGTACTGTGCTGGCTGTGGTCTGATGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAATTGTGCACCACGATTTTATTGTAAACATTGTACCAAGCTACGAAAATCAAAACAATATTGTGGCATTTGCAAAAGGACTTGGCATCATTCAGATGGTGGGAATTGGGTGTGTTGCGATGGATGTAATGTGTGGGTGCATGCTGAGTGTGATAAAATAACCAGCAGACTTTTCAAGGATCTGGAAAATACAGATTACTACTGTCCAGATTGCAAGGGAAAATTCATTAGTAATTTACCAGCATCACAAACATACAAGCCGAGAATCAAATCAATAGAGAATAGCCAAAAATCTATGATACCCGATAGTGTATTGGTGGTGTGCAACGGCATGGAAGGAATATATATCCCAAAGCTTCATCTAGTCATGTGCAATTGTGGCTATTGTGGTTCAAGGAAGCAGACACTCAGTGAATGGGAAAAACATACTGGTTGCAGAGCGAAAAAATGGAAACATAGTGTGAAAGTGAAAAGTACAATGCTACCTCTGGAAAAATGGATGGCTGAGCACATTCCACTAGAGGGAATAACCCAGCAGTTAGATCAGCAGCAGGTACTTGCTTTCTTGCAAGAGAAGTACGAGCCTGTTAATGCAAAATGGACAACGGAAAGGTGTGCTGTTTGCAGATGGGTTGAAGATTGGGAAGATAATAAAATTATTATTTGCAACAGATGTCAAATAGCTGTCCACCAAGAGTGCTATGGGGCAAAAAATGTTAAGGATTTAACTTCTTGGGTTTGCAGAGTATGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAAAAGGTGGTGCTTTAAAGCCAACTGATGTTGAAATGTTGTGGGTTCATGTAACATGTGCTTGGTTTCGACCTCAAGTTGTTTTCCAAAACCATGAGGCCATGGAACCTGCTGTGGGAATCCTTAAAATTCCTCCTAATTCGTTTGTGAAGACTTGTGTGATTTGTAAACAGAGCCATGGTTCCTGTATAACTTGTTGCAAGTGTTCTACATATTTTCATGTGATGTGTGCATCAAGGGCAGGATATACAATGGAATTGCATTCCATGGAGAAGAATGGGTCTCAAATAACGAAGAAGCTAATATATTGTTCAGTTCACAGGGTCCCAAATCCAGATTCAGTACTAGTCATACACACACCCCTGGGGATTTTCTCTCCCAGAACTTCCCTTCAAAATCAGAAAGGATGCTTCAGGGGATCAAGGCTAATTTCATCAAAGAATATAGAGCTTATTGAATCTTCAACCACTGAAAATGAGGTAGTTGAGCCACTGTCTGCTGCTAGATGTCGTGTGTACCGTAGGTCTCCTAATAAGAGAGCCAATGAGCCAATAATTCACTGGCCCAGGGGACCCACCCGTCATTCCCTAGATGCAATAACTCTGTTGAATGGCTTTAAGGAACGTCTTCACCATTTACGGGAAATGGAAAAATTGAGAGTTTGCTTTGGAAAATCAGGCATTCATGGATGGGGCCTCTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATCGTGGTGTGCATGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCAAAATATCGTTCGGAAGGCAAAGATTGCTATCTGTTCAAGATTAGCGAGGAAGTGGTAGTTGATGCAACAAACACGGGCAATATTGCACGCTTAATAAACCACTCTTGCATGCCAAACTGCTACGCAAGGATAATGAGTCTGGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGACTAATGTTTCTGCTGGTGAAGAACTAACGTATGACTACTTGTTCGATCCAGATGAGCGGGATGACCTGAAAGTTCCCTGCCTTTGCAAAGCCCCCAATTGTAGGAGATTTATGAATTAG 2922 0.4483 MIVKRTMKAEAPNLKRCKIDGTENAIQKKRRVNGLYSLGVPGDAEYFSSGSGSWSSEGSYWGGGGEVQSNSNSFMFNRKMVKEARRPPLLRSSRGRVQKLPSRFNDSVLDADGDSSFEDNDKSYVEDGRGGIGVSVERSDSVCCSSSVGRRTGVMAESNTSGISFEGVDQKSNGEKRNEVFKLEDFSLGDIVWAKCGKRYPAWPAVVIDPALEAPESVLSCCIPGALCVMFFGYSKNGTQRDYAWVKQGMVFPFSEFLDRFQGQTRLYKSKPSDFRMALEEAMLAEDGVLESHLGRVEVPDAEAHPARLMEATCYYVDEEYYGQEQVTGYCAGCGLMLPCKTMKKIKDSNCAPRFYCKHCTKLRKSKQYCGICKRTWHHSDGGNWVCCDGCNVWVHAECDKITSRLFKDLENTDYYCPDCKGKFISNLPASQTYKPRIKSIENSQKSMIPDSVLVVCNGMEGIYIPKLHLVMCNCGYCGSRKQTLSEWEKHTGCRAKKWKHSVKVKSTMLPLEKWMAEHIPLEGITQQLDQQQVLAFLQEKYEPVNAKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGAKNVKDLTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPQVVFQNHEAMEPAVGILKIPPNSFVKTCVICKQSHGSCITCCKCSTYFHVMCASRAGYTMELHSMEKNGSQITKKLIYCSVHRVPNPDSVLVIHTPLGIFSPRTSLQNQKGCFRGSRLISSKNIELIESSTTENEVVEPLSAARCRVYRRSPNKRANEPIIHWPRGPTRHSLDAITLLNGFKERLHHLREMEKLRVCFGKSGIHGWGLFARRDIQEGEMVVEYRGVHVRRSVADLREAKYRSEGKDCYLFKISEEVVVDATNTGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDERDDLKVPCLCKAPNCRRFMN* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01456 973 CDD PHD_ATX3_4_5_like 553 599 IPR042011 -
Phac10g01456 973 SMART PWWP_4 186 255 IPR000313 -
Phac10g01456 973 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 424 IPR013083 -
Phac10g01456 973 ProSiteProfiles Post-SET domain profile. 957 973 IPR003616 -
Phac10g01456 973 SUPERFAMILY FYVE/PHD zinc finger 367 423 IPR011011 -
Phac10g01456 973 CDD PWWP_AtATX3-like 189 288 - -
Phac10g01456 973 Pfam PHD-finger 566 600 - -
Phac10g01456 973 FunFam Histone-lysine N-methyltransferase 805 973 - -
Phac10g01456 973 Pfam SET domain 842 947 IPR001214 GO:0005515
Phac10g01456 973 SUPERFAMILY SET domain 829 969 IPR046341 -
Phac10g01456 973 Pfam PHD-zinc-finger like domain 607 719 - -
Phac10g01456 973 Gene3D - 177 292 - -
Phac10g01456 973 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 603 721 IPR013083 -
Phac10g01456 973 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 973 IPR025780 -
Phac10g01456 973 ProSiteProfiles PWWP domain profile. 188 257 IPR000313 -
Phac10g01456 973 SMART PostSET_3 957 973 IPR003616 -
Phac10g01456 973 SMART PHD_3 369 421 IPR001965 -
Phac10g01456 973 SMART PHD_3 553 600 IPR001965 -
Phac10g01456 973 SMART PHD_3 664 720 IPR001965 -
Phac10g01456 973 ProSiteProfiles Zinc finger PHD-type profile. 367 423 IPR019787 -
Phac10g01456 973 Gene3D SET domain 777 973 IPR046341 -
Phac10g01456 973 PANTHER PHD FINGER PROTEINS 81 950 - -
Phac10g01456 973 CDD PHD_TCF19_like 370 420 - -
Phac10g01456 973 Pfam PHD-finger 369 422 IPR019787 -
Phac10g01456 973 Pfam PWWP domain 189 285 IPR000313 -
Phac10g01456 973 SUPERFAMILY Tudor/PWWP/MBT 181 297 - -
Phac10g01456 973 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 548 602 IPR013083 -
Phac10g01456 973 ProSiteProfiles Extended PHD (ePHD) domain profile. 605 720 IPR034732 -
Phac10g01456 973 ProSiteProfiles Zinc finger PHD-type profile. 551 602 IPR019787 -
Phac10g01456 973 CDD SET_SETD1-like 820 969 - -
Phac10g01456 973 ProSitePatterns Zinc finger PHD-type signature. 554 599 IPR019786 -
Phac10g01456 973 SUPERFAMILY FYVE/PHD zinc finger 552 616 IPR011011 -
Phac10g01456 973 SMART set_7 831 954 IPR001214 GO:0005515
Phac10g01456 973 ProSiteProfiles SET domain profile. 831 948 IPR001214 GO:0005515
Phac10g01456 973 FunFam Histone-lysine N-methyltransferase 603 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01456 Phac-Chr10 37655808 37664424 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01456 554 719 C2H2 Transcription Factor Family AT3G14740 32.948 4.16e-21 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac10g01456 zf-HC5HC2H_2 4.3e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01456 - - gmx:100797346 1779.61