Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01454 ATGGGCATCTTGGAAGTCCTTTTTCCCTTCTTCATTTTTCCTGTCATATATGCCTCTAGTGATTGCCGATTTTCTTTTTGTGGCAGCAATGGTATCATTATTCGTTTCCCCTTTCAACTAGAAGGTAAGCAAAATCCTTATTGTGGCTATCCTGGTTTCAACTTAATTTGCACGAATAATAGCAAAACAGTGCTAAAACTTCCTTATTCTGGGGTATTCTACGTGCGCAACATTAACTATCTCACACAAAAGATACAAGTCTACGACCCAGATGATTGCCTCCCCAAACGTCTTCTCAGCCTCAATGTCTCAGCCTCTCCTTTTATTCCCACTTTTACTCGTAACTACACCTTCTTAAGCTGCCCATTAAAGAACGCAGGATCACAATTCATTCCCATTGACTGCCTCAGTAATTCCACACAATTTGTATCAGCTGTCCCTTCACTTAGTTTGCCCAATCCATTACCTGCATCTTGCCATGTTATTACCAGTCTTTTTGTCCCAGTTGCAGGGCCAGAGCAGCGCTATGAGGGTAATTTCAAAGGTGAGTTTAGTGAAGATCTTGCATTAACATGGGATAGACCTGACTGTAGATATTGTGAAGCCCAAGAACAATTGTGTGGGTTTGATCGAAACAACAACAATCAACTCTTCTGTTTCTCTTACCAAAGAGGTGCATCAAAACAAGGAATCCAAATCTTCAGAATCATTACATTAAGCATTGTTGGACCAGCAGCAATCTTTGCAATTGTGATGGCATGTTGCGTGTGCTACAAGGACAGACTAACCAACATTCGTAACAATGCTATTGCAAGATCTGCACCAGCCACAATATTACCAGCACCAGAGATTGTTACCACTGGTTTGGACGAGTCCACCATTGAGTCCTATGAGAAGGTAGTGCTTGGAGAGAGTAGAAGAGTCCCTGGACCCAACAATGGTTGCTGTTGGATATGCTTATCAGAATACAATAGCAAAGAGACAATAAGATGTATTCCTGAATGCGAACACTGCTTCCATGCAGATTGCATAGACGAGTGGCTTCGCATCAATACCACGTGCCCAGTTTGTCGTAACTCTCCCTCTCCTTCTCCTTCTCCTCGTGTTACCTCCATTAACCCCTAA 1125 0.4249 MGILEVLFPFFIFPVIYASSDCRFSFCGSNGIIIRFPFQLEGKQNPYCGYPGFNLICTNNSKTVLKLPYSGVFYVRNINYLTQKIQVYDPDDCLPKRLLSLNVSASPFIPTFTRNYTFLSCPLKNAGSQFIPIDCLSNSTQFVSAVPSLSLPNPLPASCHVITSLFVPVAGPEQRYEGNFKGEFSEDLALTWDRPDCRYCEAQEQLCGFDRNNNNQLFCFSYQRGASKQGIQIFRIITLSIVGPAAIFAIVMACCVCYKDRLTNIRNNAIARSAPATILPAPEIVTTGLDESTIESYEKVVLGESRRVPGPNNGCCWICLSEYNSKETIRCIPECEHCFHADCIDEWLRINTTCPVCRNSPSPSPSPRVTSINP* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01454 374 CDD RING-H2_EL5-like 315 358 - -
Phac10g01454 374 SMART ring_2 316 357 IPR001841 -
Phac10g01454 374 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 362 IPR046948 -
Phac10g01454 374 ProSiteProfiles Zinc finger RING-type profile. 316 358 IPR001841 -
Phac10g01454 374 Pfam Ring finger domain 316 358 IPR001841 -
Phac10g01454 374 Pfam Wall-associated receptor kinase C-terminal 155 221 IPR032872 -
Phac10g01454 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 363 IPR013083 -
Phac10g01454 374 Pfam Wall-associated receptor kinase galacturonan-binding 22 89 IPR025287 GO:0030247
Phac10g01454 374 SUPERFAMILY RING/U-box 315 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01454 Phac-Chr10 37646110 37648443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01454 24 363 C3H Transcription Factor Family AT2G25410 45.821 7.11e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01454 - - gmx:100798415 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01454 10 37646110 37648443 Phac10g01454 10 37646110 37648443 ECH