Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01441 ATGCATACAAAGCTGTTGACCCAAATTCGTCTTCTTCATCCCCTTCTTCCCATGAAGCCTCGCACAGTTCCTCTTCTCTCTCGCGCCATCTTCTTCCCTCCCTCCAAGTTCCTCCGAACCGCAGCAACGTTTAAAGCTCGCGCCTTTTCCGCCCGGGTCAGTGCCCACGCTCGCGACAAGATTCCGGTTCGCCCCTCCAAGAGCCTCGTTGACGACGAGGCTGAACTCAGTGACTGGGTCGATGAGTTGCGGACCGGCCGGGTCGACCGCTTCGCCCAACGGCTTGGCAGCGACGACGATGAAGGCCGCGAAACCCGGCCGCCGCGGAGGAATAACAATAGGGCTTCCTCCAATTTGGGGAAGAGGAGGGGCGAGGATTTGATGAGGGGAAGGCAGAATGCGGGTGCGAGGAGAAAGTTTCAACCTCGGAGTGACGACGATGAGGAAGTGGTGCAGAGTGGAAGGAAGTTCAAGGGTGGTGGCGTTGGAACGTTTCTCAGCGAAGATGATAGTGAAGATGAAAACAGTGATGGGAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAACCGCTTTGTTTGGAAAACAAAATGGTCTGAAGCCGAAGACTGTTGAACCGACTCCTAGACCATCTTCTCCTGGAGGTTCTGATTCTTATCTGAGTGAATCAAGATTTGACCAATGTTCAGTCTCCCCACTGTCACTAAAAGGAATCAAGGATGCTGGATATGAGAAAATGACGGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTGAAAGGTAAGGATGTCCTTGCCAAGGCCAGGACAGGCACTGGAAAAACAGTAGCATTTTTGCTTCCGTCAATTGAAGTTGTGGTAAAGTCACCTCCAAGTGATCGTGATAATAGGCGGCCACCAATTTTTGTTCTTGTCATATGCCCAACTCGAGAACTTGCAAGTCAGGCTGCTGCAGAGGCCAATAAACTGCTTAAGTATCATCCTGCCATTGGTGTTCAAGTTGTGATTGGAGGCACAAGACTTGCTTTAGAACAGAAACGAATGCAAGCAAATCCTTGCCAGATCCTTGTGGCTACTCCTGGAAGGCTTAGAGATCATATTGAGAATACTGCTGGTTTTGCATCTAGGCTGATGGGTGTGAAGGTTTTGGTGCTTGATGAAGCTGATCATTTACTTGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCAGCAGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACAGTTCCAGAAGAGGTACGTCAAGTTTGTCATATTGCTTTGAGAAGGGATCACGAATTTATCAACACAGTTCAAGAGGGTAGTGAGGAGACACATTCTCAGGTCCGCCAGACGCATTTAGTTGCTCCATTGGACAAGCATTTCCCTTTACTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGGTTCTTGTTTTCTGCACGACTGCTATGGTCACTAGACTTGTTTCTGAACTTCTTGGTGAGTTGAACTTGAATGTAAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTGACTCTTGTTATACAGGTTGGTTTGCCAGCAGATAGAGAACAGTATATACATCGCCTGGGTAGAACTGGCCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTGCTGGCTCCTTGGGAAGAGTTCTTTTTATCTACCATAAAAGATTTGCCTATTGAGAAAGTTCCCGTGGTACCTTCAGTTGATCCTGATACTAAGAGAAAGGTAGAAAAAGCTCTATCCCATGTGGATATGAAGAACAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCGAACAAGAAAGTGGGGCGTGACAAGCATAGGCTAGTGGAGCTTGCAAACGAGTTCAGTCGAAGCATGGGGCTTGATAACCCTCCAGCTATAGCTAAGCTAGTCCTTGGCAAGATGGGCCTCAGGAATATCCCTGGTTTACGTTCCAAATAG 2079 0.4733 MHTKLLTQIRLLHPLLPMKPRTVPLLSRAIFFPPSKFLRTAATFKARAFSARVSAHARDKIPVRPSKSLVDDEAELSDWVDELRTGRVDRFAQRLGSDDDEGRETRPPRRNNNRASSNLGKRRGEDLMRGRQNAGARRKFQPRSDDDEEVVQSGRKFKGGGVGTFLSEDDSEDENSDGSEEEEILNKSRTALFGKQNGLKPKTVEPTPRPSSPGGSDSYLSESRFDQCSVSPLSLKGIKDAGYEKMTVVQEATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVVKSPPSDRDNRRPPIFVLVICPTRELASQAAAEANKLLKYHPAIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFASRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQEGSEETHSQVRQTHLVAPLDKHFPLLYVLLKDHIADDVDYKVLVFCTTAMVTRLVSELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTIKDLPIEKVPVVPSVDPDTKRKVEKALSHVDMKNKEAAYQAWLGYYNSNKKVGRDKHRLVELANEFSRSMGLDNPPAIAKLVLGKMGLRNIPGLRSK* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01441 692 Gene3D - 203 439 IPR027417 -
Phac10g01441 692 PANTHER RNA HELICASE 180 621 - -
Phac10g01441 692 SMART helicmild6 495 576 IPR001650 -
Phac10g01441 692 Pfam Helicase conserved C-terminal domain 476 576 IPR001650 -
Phac10g01441 692 MobiDBLite consensus disorder prediction 119 154 - -
Phac10g01441 692 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 254 437 IPR014001 -
Phac10g01441 692 SMART ultradead3 242 455 IPR014001 -
Phac10g01441 692 MobiDBLite consensus disorder prediction 209 223 - -
Phac10g01441 692 Pfam DEAD/DEAH box helicase 248 425 IPR011545 GO:0003676|GO:0005524
Phac10g01441 692 MobiDBLite consensus disorder prediction 91 223 - -
Phac10g01441 692 Gene3D - 446 673 IPR027417 -
Phac10g01441 692 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 471 619 IPR001650 -
Phac10g01441 692 CDD DEADc_MSS116 230 439 - -
Phac10g01441 692 MobiDBLite consensus disorder prediction 91 110 - -
Phac10g01441 692 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 223 251 IPR014014 GO:0003724
Phac10g01441 692 CDD SF2_C_DEAD 452 585 - -
Phac10g01441 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 593 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01441 Phac-Chr10 37477440 37483181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01441 223 601 Eukaryotic Initiation Factors Gene Family AT3G19760 29.156 1.08e-46 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01441 - - gmx:100795739 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01441 10 37477440 37483181 Phac10g01441 10 37477440 37483181 ECH