Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01313 ATGGTGGACGGCGGCGAATTCGCCGGCACCATTTGCTCGATCTGTTACGAGCCTCTCGACCCCATTACCGAGGACCTCCAATCGGTCTCCATCTGCGGCCACGTCTTTCACGAACTTTGTCTGCAGCAATGGTTCGAATACTGTTCGAAAGGGAAGAAACACACTTGCCCCATTTGCAAGCAGAGTTGCAGGGCCAGCGATGCGTGCAGGCTTTATTTTCAGTCAGTGGGGGATGCGAGCGATGGAGGGAAGCTTCTGAGGAGCTTTGAATCTGAGGAAAATGTTGGGGTTTTGCGTAGGGAAGTAAAGAGATTGGAGGTGAAGGTTTCGGGGCTCACTTCTGAGCTGGAACGGCAAACAAAGGAATTGGAAGGAGTTAAGGAGGAGCTTTGTATTTGCAAGGAGGAGGCAAAGACAGAAACAACATTAAAGATTGAGGCTCTAAATCAAAAATCGTTCATACAATTCCAGTTACATAAAAAATCAGAGGAACTTGAGAAGTCAACTTTGGAGTCTTTTAGATTAAAAGAAAAGAACATGGCTTTGGCTAAAGAACTTGCCGCATTAAAATTAGTGTCTGATCTGGACATCGATGAAGAGGAGGTTTTGAAGCTTGCCACTTTCGGTAATGGGGCCAACAGTAAAGACACTATAGATACATTGAAAAGATCTCTGGTCATGCGGAACAGGAGTTACAAAGAATTGATGGCCAAGTGCAATGTTCTTGGAAGAGGTGAGGCTCGTTATAGCAAAAAGCTTGAGAAAGCTAAAGAAAAGATCACGAAACTGAAGGCAAAGGTACAAGAACTCGAGACATTAGCTGAAGCAAAAGAAAATGAATATCTGATGTCGCTGAAACTTTCAAAAAGAACGAAGAGTTCAAAGAATTTTGAAAAAAAGTACACAGATTCTGATGCGACAGCTTCCAAATTTCCAGTAGAAAAACCAGGCAAACAAATCTCGGCACCCAAATCTGGAATAAACCTGGCTGCAAACGACAACTGTAAATCTTTTCAATCTTTGAAGATTGAGAACTCCAATGCTACTACAAATAAGGCTGTGAATATTAGTAATGAAACTCCTGATAAAAAGAGAGACTATATCACAATTGATGAAGATGAATTAGAAGCCACTAAAGCTTTGCATGGATGTTCAAAACACAACAAGAAAGAACGAGACATGAATGATATTGCTTGTACCAAGCCTTCTCCAGCGAAGCTAGAGACCATGTCTGCCACAAATACCGAAACATTATTGCAAGGAAAATGTACTTTGGCTGAGTCTCCCAGAGTTGATGTTGACATTGACATGACTAACAATTCAGCTGGTCCTATGGATGAAGATGTAACTTTACAAACCACCATTAACCAACCTGTGGTGAACATTAGAAAGGAGTCACCATTTACGCTTTCAAATTCAGGTCCAGATAATATCTGGTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTCATCGGTTTTTGGGAAAATGGTGCAAGCGTGGACAGAACAGTGAATCATCATCTGCAAAAAGATCAAGTAATGGGGATTTAATATCTGTCGGGGCTGATGGTAGAGGTGGCAGAATAAAAGTTCTAAGGACTCCTGCCCAAATCCTCTCGGGTGGTAAGGAAAATTCAGCAAGTTCAAAAAGGTCAAAGCTTGGAGCTAAAACAAGTAGTTTGCATTCCCAGGGGTGTCTGCAGATAGAACACTTTTTTGGGAGAGTCACTCAGTAA 1737 0.422 MVDGGEFAGTICSICYEPLDPITEDLQSVSICGHVFHELCLQQWFEYCSKGKKHTCPICKQSCRASDACRLYFQSVGDASDGGKLLRSFESEENVGVLRREVKRLEVKVSGLTSELERQTKELEGVKEELCICKEEAKTETTLKIEALNQKSFIQFQLHKKSEELEKSTLESFRLKEKNMALAKELAALKLVSDLDIDEEEVLKLATFGNGANSKDTIDTLKRSLVMRNRSYKELMAKCNVLGRGEARYSKKLEKAKEKITKLKAKVQELETLAEAKENEYLMSLKLSKRTKSSKNFEKKYTDSDATASKFPVEKPGKQISAPKSGINLAANDNCKSFQSLKIENSNATTNKAVNISNETPDKKRDYITIDEDELEATKALHGCSKHNKKERDMNDIACTKPSPAKLETMSATNTETLLQGKCTLAESPRVDVDIDMTNNSAGPMDEDVTLQTTINQPVVNIRKESPFTLSNSGPDNIWFSGGLLGPDGTHRFLGKWCKRGQNSESSSAKRSSNGDLISVGADGRGGRIKVLRTPAQILSGGKENSASSKRSKLGAKTSSLHSQGCLQIEHFFGRVTQ* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01313 578 Pfam Ring finger domain 11 60 IPR001841 -
Phac10g01313 578 SMART ringv_2 11 60 IPR011016 GO:0008270
Phac10g01313 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 180 IPR013083 -
Phac10g01313 578 MobiDBLite consensus disorder prediction 539 557 - -
Phac10g01313 578 SUPERFAMILY RING/U-box 10 64 - -
Phac10g01313 578 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 576 - -
Phac10g01313 578 MobiDBLite consensus disorder prediction 501 521 - -
Phac10g01313 578 Coils Coil 246 280 - -
Phac10g01313 578 MobiDBLite consensus disorder prediction 534 557 - -
Phac10g01313 578 SMART ring_2 12 59 IPR001841 -
Phac10g01313 578 Coils Coil 102 129 - -
Phac10g01313 578 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Phac10g01313 578 MobiDBLite consensus disorder prediction 501 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01313 Phac-Chr10 35704247 35709043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01313 352 578 C3H Transcription Factor Family AT4G01270 34.413 1.59e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01313 K11985 - gmx:100812811 838.565