Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01290 ATGGCAGCTGTTAGGGCTTCCTCTGTTAGACGAATAGGAAGCACAATCAAGGTTTCTTTCAATATGGAATTAGTTCAGCGCTGTCACTATCACCATAGTGTCTGTGTCAACCTTGCAAGGTTGCCAAGTGATTCACCGAGTCATCCTTATTACAAAAGAGAGTTACAGTCTGCTAAGAATCAGTTCAGTAATTTGGCTTCTGAATCATTTGGAAGCAGTCACCAATTTGGTACTAGAGCCAATTTATCGTTTAAACCTGCATTCTCTAGCTATTGTTTTCGGAGTGCCCTTCCTTTTGCTTCCGCGAGCCACGTGTTGAATCGCCGATCTTATTCGTCGACGGTGGGTGGTGATAAAGGAAGTAGAGATGCTGGTACAGAAGTCGCTGCTGGTTCTGGTGCGAGTGACATGAATATCACTGGTGATTCTGTTGTTGGGGGTGATTGGGCTGAGAGGATTAAAGATGGTTGGAAGAGTGTGGTAGAGTCAGCATCATATGCTGGGGAAAAGGTTAAAGCAACATCTGATGATCTCACTCCATATGCTCAGCAGTTGCTTGATTCACACCCATATTTAGACAAGGTGGTTATTCCAGTTGGTGGTACTTTAACTGCTACTCTAATTGCTTGGTTCTTGATGCCTATGATTTTGAGGAAATTTCACAGATATGCAATGCAAGGTCCCGTTTCTCTATTGCCAGCAAGCATATCTGGAGATCCAGTTCCTTATGAGAAAAGCTTTTGGGGTGCCCTGGAGGATCCTGTGCGATATTTAGTTACCTTCATGGCATTCTCACAAATTGGTGTAATGGTAGCTCCAACAACTATAACCGCAGAATATCTTGCACCAGTTTGGAGGGGTGCAGTGATAGTTTCGTTTGTATGGTTTTTGCATAGATGGAAAACAAACGTTTTTGCCCGGACATTAACCAGTCAAAGTTTACTTGGACTTGATAGGGAGAAAGTGCTCGCTCTAGACAAAATCTCATCTATTGGTCTATTTGTGATTGGTATAATGGCTTTTGCTGAGGCTTGTGGTGTGGCCGTGCAATCTATTGTTACTGTTGGTGGTATAGGAGGAGTGGCTACTGCTTTTGCTGCCAAGGACATTCTTGGCAACGTGTTTAGTGGTTTATCTATGCAGTTTTCTAAGCCTTTTTCAGTTGGAGATACAATAAAAGCAGGCTCGATAGAGGGTCAAGTGGTGGAAATGGGTCTTACTACTACGTCTTTGCTGAGTTCAGAGAAGTTTCCAGTTATTGTTCCAAACTCATTTTTTTCTAGCCAGGTTATTGTGAACAAATCCCGTGCTGAATATCGTGCCATTATAAGCAAAATTCCTCTGCAAACTGAGGATTTAAGTAAGATTCCCCAAATTTCAGATGATGTAAAAAGCATGCTCAGATCAAATGCAAAGGTTTTCCTAGGGAAAGATGTTCCCTACTGTTTCTTATCCCGTATAGAAAGTTCATTTGCAGAATTGACTCTTGGATACAACCTCAAACATATGCGCAAAGATGAACTATACTCGGCTGAACAAGAAATTCTGCTGCTGGCAGTTCAGATCATAAAAAATCATGGGGTTGCTCTTGGCAGCACATGGCAAGAAATGCCTTCTAAATGA 1623 0.4221 MAAVRASSVRRIGSTIKVSFNMELVQRCHYHHSVCVNLARLPSDSPSHPYYKRELQSAKNQFSNLASESFGSSHQFGTRANLSFKPAFSSYCFRSALPFASASHVLNRRSYSSTVGGDKGSRDAGTEVAAGSGASDMNITGDSVVGGDWAERIKDGWKSVVESASYAGEKVKATSDDLTPYAQQLLDSHPYLDKVVIPVGGTLTATLIAWFLMPMILRKFHRYAMQGPVSLLPASISGDPVPYEKSFWGALEDPVRYLVTFMAFSQIGVMVAPTTITAEYLAPVWRGAVIVSFVWFLHRWKTNVFARTLTSQSLLGLDREKVLALDKISSIGLFVIGIMAFAEACGVAVQSIVTVGGIGGVATAFAAKDILGNVFSGLSMQFSKPFSVGDTIKAGSIEGQVVEMGLTTTSLLSSEKFPVIVPNSFFSSQVIVNKSRAEYRAIISKIPLQTEDLSKIPQISDDVKSMLRSNAKVFLGKDVPYCFLSRIESSFAELTLGYNLKHMRKDELYSAEQEILLLAVQIIKNHGVALGSTWQEMPSK* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01290 540 SUPERFAMILY Sm-like ribonucleoproteins 369 434 IPR010920 -
Phac10g01290 540 Gene3D - 280 384 - -
Phac10g01290 540 Gene3D - 385 433 IPR023408 -
Phac10g01290 540 MobiDBLite consensus disorder prediction 112 134 - -
Phac10g01290 540 Pfam Mechanosensitive ion channel 327 529 IPR006685 GO:0016020|GO:0055085
Phac10g01290 540 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 282 368 IPR011014 GO:0016020
Phac10g01290 540 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 149 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01290 Phac-Chr10 35387117 35392830 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01290 96 536 Mechanosensitive Ion Channel Family AT4G00290 62.585 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01290 K22047 - gmx:100789047 936.791