Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01278 ATGGGTTTTCCGGTGGGTTACGCCGAGGTGTTCTTCCCCAACCCCTTCCTCCACACACTGGCCTTCCTCGGCCTCCTCCGAAACCTCGTCTTCTTTCTCTTCCACCTCCTCGGACTCTCCGACTTCCTCGAAACCGAGGTCGCATGGCCGGACCCCCGCACCTCCGCCGCCACCGCCGCCGTCTCCAGGCCTCCCTCCGTGTCGGCGCTACTTATCCGGGACATCCTCCCCGTCGCCAAGTTCGGGGAATCCGGAGAGAACTCCTGCGCCTGCGCCGTCTGTCTGTTCGAGTTCTCCGAGGAGGAGGAGATTCGGTGTATGCGGAACTGCAAACACATTTTCCACCGCGCCTGCGTGGACCGTTGGATCGATCACGATCAAAAAACGTGCCCTCTATGTAGGACCCCTTTTGTGCCCGATGACATGCTTGATGATTACAATCAACGCCTCTGGGCTGCTTCTGGAATCAACGAGTTCTACGCCGATTACACTTCTTCCTTCTGA 504 0.5873 MGFPVGYAEVFFPNPFLHTLAFLGLLRNLVFFLFHLLGLSDFLETEVAWPDPRTSAATAAVSRPPSVSALLIRDILPVAKFGESGENSCACAVCLFEFSEEEEIRCMRNCKHIFHRACVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAASGINEFYADYTSSF* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01278 167 SMART ring_2 91 133 IPR001841 -
Phac10g01278 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 139 IPR013083 -
Phac10g01278 167 SUPERFAMILY RING/U-box 71 141 - -
Phac10g01278 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 153 - -
Phac10g01278 167 Pfam Ring finger domain 90 134 IPR001841 -
Phac10g01278 167 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01278 Phac-Chr10 35275806 35276957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01278 1 166 C3H Transcription Factor Family AT1G63840 45.087 2.09e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01278 K16281 - gmx:100790975 314.309