LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac10g01275	ATGATCCCTTTGATGGGTGCAAAATTTCCTGCAAGTGCGCTGAGAGAGCAGGAAGTTCAAGATTATCATGAGAGGGAAAGGCAAAACATTCAGAAGACTATGGATGCCTATCTTTATATCTGTCAAAAAATGGGGGTGCGGGCAGGGAAACTACACATTGAAATGGATAGTGTAGAAAAAGGGATTGTAGAACTCATCCACCAGTATGGCATACAGAGGCTTGTAATGGGAGCAGCATCTGATAAGTACCATTCTAGGAGAATGATATCCCTCAAATCTAAGAAAGCTATATATGTATGTGAACAAGCTCCAGCTTCATTTCATATACAGTTTATCTGCAACGGGTACCTCATACACACAAGGGATTGCAGATTGGATAGAGGGAATGTAGAGGTCGTATCTCCTTCTGTGCAGCGAATAGCAAACTCTGGAGTTGGGCATTCACCTAACATGGGATCGCCATCCACAGTGCAAGGGCAAAATCGTTGGATAAAACTAAGTAATCCCGGAAAAGAGTTATTTCGTAGAGTTAGGACTATCAGTGATGGAGATGGGAGGAGCATTGGATCTGTTTCTTCTTTAGAAGGCTTCTTAACTCCTCAGAGAAAGTTCGGTAAAGAAGCAAGTTGTGATGAGGTAGGTCGGCAGTCACGGCGGAGTCCTTCAGTATCTCAATGTGCTGATGGAGGAATGGATGATGCTCTCTATGCTCAACTTGAACAGGCAATGGCTGAGGTTGCGAATGCTAAGCATGATGCATATCAAGAAACTTTTAAGCGTGTGAAAGCAGAAAGAGATTCCATTGATGCTATACGCAACGCTAAAGCCATTGAGAATTTGTATCAAGAAGAGCTAAAACTAAGAAAAGAACAAGAGGAAGAAGTGCAGAAAGCAAATGAAGAACTTGAGGATATGAAGAGGCAGATAAACAAAGTTAATGAGGAACTCCAACTCGCCTTTGATCAGAAATTATCTCTAGAGAATCGAATTGCATCAACTGAACTTATTATAAAGGAGTTGGAGCAGAAGAATATATCTGCTGCTGAGCTGTCTCAAAAGTACAAGAATGAAGTAGATGATTTGCAAATGCAGCGTGATAATGCATTGGGAGAGGCCGAGGAGTTAAGGAGAAAACAAGGGGAAGCCTCAAGCACGCACGGGCTTCAACCCTTCTCAGAATTCTCCTTTTCAGAGATTAAAGAAGCAACAAGAAACTTCAATCCATCCCTCAAGATTGGACAAGGAGGATATGGAAGTATATTTAGAGGTATCTTACGTCACACTGAGGTGGCTATAAAAATGTTGAGTCCTGATAGCAGCACCCAAGGTCCAGGGGAGTTTCAACAAGAGGTAGAGGTATTGAGCAACTTAAGGCACCCCAACCTTGTGACACTTATAGGGTCCTGCCCAGAATCCTGGACTCTTGTCTATGAGTATTTACCCAACCAGGCAACATTCTCCTTGATGCAAACTTTCAGCACTACACAGTTTTGGAGAACTGTTCCAAAGGGAACTTTTGTGTATGTGGATCCTGAATTCCTTACTTCTGGTGAACTCACACCAAAGTCAGATGTTTATTCATTTGGAATCATTCTATTGAGATTGATCACTGGGAAACCTGCTTTGGGAATAGCAAAGGAAGTGCAATATGCATTAGATAGTAGAAAGTTGAAATCCATCTTGGATCCATTGGCTGGAGACTGGCCATTTATGCTAGCTGAAGAGTTGGTTCGCTTGGCTTTGAGGTGTTGTGAGATGAATAGAAGGAACAGACCAGATTTTTATCCAGATGTTTGGAGAATACTGGAACCAATGAGGGCTTCTTGTGGAGGCAGCAACACCTTTCAACAGGGTTCTCAAGGAAAATGCCAACCTCCTCCATATTTCATTTGTCCAATCTCTCTGGAAGTCATGCAAGATCCACACGTGGCTGCAGATGGTTTTACTTATGAAGCTGAGGTTATACGTGAATGGCTGAAAAATGGTCGACACGTTTCACCAAGGACAAACTCTAAGTTTGCTCATCACCACCTCATTCCCAACCACTCTCTTCGCCATGCAATTCAGGACTGGCTTCAAACTCACTGA	2088	0.4267	MIPLMGAKFPASALREQEVQDYHERERQNIQKTMDAYLYICQKMGVRAGKLHIEMDSVEKGIVELIHQYGIQRLVMGAASDKYHSRRMISLKSKKAIYVCEQAPASFHIQFICNGYLIHTRDCRLDRGNVEVVSPSVQRIANSGVGHSPNMGSPSTVQGQNRWIKLSNPGKELFRRVRTISDGDGRSIGSVSSLEGFLTPQRKFGKEASCDEVGRQSRRSPSVSQCADGGMDDALYAQLEQAMAEVANAKHDAYQETFKRVKAERDSIDAIRNAKAIENLYQEELKLRKEQEEEVQKANEELEDMKRQINKVNEELQLAFDQKLSLENRIASTELIIKELEQKNISAAELSQKYKNEVDDLQMQRDNALGEAEELRRKQGEASSTHGLQPFSEFSFSEIKEATRNFNPSLKIGQGGYGSIFRGILRHTEVAIKMLSPDSSTQGPGEFQQEVEVLSNLRHPNLVTLIGSCPESWTLVYEYLPNQATFSLMQTFSTTQFWRTVPKGTFVYVDPEFLTSGELTPKSDVYSFGIILLRLITGKPALGIAKEVQYALDSRKLKSILDPLAGDWPFMLAEELVRLALRCCEMNRRNRPDFYPDVWRILEPMRASCGGSNTFQQGSQGKCQPPPYFICPISLEVMQDPHVAADGFTYEAEVIREWLKNGRHVSPRTNSKFAHHHLIPNHSLRHAIQDWLQTH*	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac10g01275	695	ProSiteProfiles	U-box domain profile.	624	695	IPR003613	GO:0004842\|GO:0016567
	Phac10g01275	695	Gene3D	Transferase(Phosphotransferase) domain 1	480	617	-	-
	Phac10g01275	695	CDD	RING-Ubox_WDSUB1-like	626	681	-	-
	Phac10g01275	695	Gene3D	Phosphorylase Kinase; domain 1	376	479	-	-
	Phac10g01275	695	Pfam	Protein tyrosine and serine/threonine kinase	411	483	IPR001245	GO:0004672\|GO:0006468
	Phac10g01275	695	Coils	Coil	273	378	-	-
	Phac10g01275	695	MobiDBLite	consensus disorder prediction	369	388	-	-
	Phac10g01275	695	ProSitePatterns	Protein kinases ATP-binding region signature.	412	433	IPR017441	GO:0005524
	Phac10g01275	695	SUPERFAMILY	Protein kinase-like (PK-like)	384	595	IPR011009	-
	Phac10g01275	695	PANTHER	OS02G0152300 PROTEIN	12	483	-	-
	Phac10g01275	695	Pfam	Protein kinase domain	499	593	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac10g01275	695	FunFam	receptor-like protein kinase FERONIA	370	479	-	-
	Phac10g01275	695	ProSiteProfiles	Protein kinase domain profile.	406	695	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac10g01275	695	SUPERFAMILY	RING/U-box	615	695	-	-
	Phac10g01275	695	Coils	Coil	236	264	-	-
	Phac10g01275	695	SMART	Ubox_2	628	691	IPR003613	GO:0004842\|GO:0016567
	Phac10g01275	695	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	623	695	IPR013083	-
	Phac10g01275	695	Pfam	U-box domain	626	695	IPR003613	GO:0004842\|GO:0016567

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac10g01275	Phac-Chr10	35205170	35210289	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac10g01275	1	695	U-box Gene Family	AT2G45910	45.514	0.0	617

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Phac10g01275		Pkinase	7.8e-09	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac10g01275	-		-	pvu:PHAVU_010G0994001	880.552