LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac10g01262	ATGTCCATGGCAGGGTGGTTGCTGTTCGACGGCGGTGTTCGCGAAGAAGATAGTGGTGGCATTGTTGGAGGCTCGAACGACAATTCTTTGTGCCGTTTCGAGAGGTTGTTTGCAGAGTTCTTTAGTGAGATCTGTGTGTTTAATTGCGTTTTGCATTATCCTCCAATGCTGATGCTGGCTGATGGGCAGGATGTGGATTTGTATAGGTTGTTTTTGGTGGTGAGAGGGAAGGGTGGATACGATGCCGTTTGCAATGGGAAGTTGTGGGATTCGGTTGGGGAGGAGTCTGGGATGGGAGTGAGTGTTGGGTCCTCTGTTGAGTTGCTTTACAGTAGGTACTTGAGTGCTTTGGATTCATGGATGAAGAAAATTGCTGAGAGTAAGGTGTCTCCCGAGTTTGGTGTGGTGGATAATAGGGATAAGTTTGGGAGGCGGTTGATGGAGTTGCAGGCTGAGGTGGAAGGGTTGTTGTCCGGTTGTGCCGAGGATAGGGTGGTTGTGGCTGGAGAAGATGATCACAACTTGGATGGGAGGGAGTTCTGCGGTGCTAATGGGGTGAAAGGTAACGGTGATGAAGGAGGTGAACATAGAGAATGTTCTGATTCGGAGCTGCCGGACCATGACATGAATGAGGCGGTTCTTGGAAACTCGGGTAAGGGAAATGATGCAATGGGAGGGCAGGGAGGGTTTGACGGAGGGAAAATGTCTGAAGAGCAGGCTGTGGATGGGGCTAACAACAGTGGGCCTGGATCGGTGAGTGGAGGTACGAAGGGTGACGACAGTGATGATAAGGGCTTAGTGTTGGATGCATCTGGTGGTAATAGTGATGGTGATAGTTCTGGTCACAAGAGGAAGAGAGAGGGGTCTGTGTTGGATTCATCTAGTGATGATAGTGATAGTCCTAGTTGTAAGAGGATGCGAGAGCCTGCAATGGATATGCTGAGCTGGGTTACCGGTGTTGCAAAGAATCCTAGTGATCCTGAAGTTGGTTCAATACCTGAAAAGTCAAAGTGGAAGTCTTATAGTAGTCAGGAGGTGTGGAAGCAGGTGCTGTTTTTTCGGGAGGCCATGTTTTACAGAAGAGGTTCTGAGCCAAGCAATGAACAACGTAATTGGCAGAATCAGAAGATGCACCCTTGCTTGTATGAAGATCAAGTTGGGACAAACTACAATCTCAGAGACAGGTTGAAATGTGACAAGAAGCTTTTATTTGGGAAATATACATCTGTGCGAAGCTCTTCTGGTTCATCTCTGGAAACTGAGAACAGGACACCAAGTCCTCGTACTGAAGGTCAATCTGAGTTGTTTGATTCCTCCGATGCACATTCAGGTCTTGACAAATGTGGAACAGTGCGCATTCCTTTGGGGGCAAATCATCAAGCTGAAATACCAAAATGGACTGGTGTGACTTTTGAAAGTGATTCTAAGTGGTTAGGGACTCGAATATGGCCACAGGAAGCAGTAAATACCAGACTTATTGAAAGGGACCCCATAGGAAAGGGGAGACAAGGTTCATGTGGCTGCTCAGAAGAAGGTTCTGTTGAGTGTGTAAGATTCCACATTTCAGAGAAAAGGGCTAAAGTTCAGCTGGAATTGGGCAAAGCATTTTATGATTGGAATTTTGATCGGGTTGGTGAAGATGTTAGACTAATGTGGACGAAAGAAGAAGAGAAAAAATTTGAGGATGTGGTACGATCAAACCCTCCATCTCCTGAGAAATATTTCTGGGACTATATCTTTGGGGCTTTTCCTGATAAAAGCAGGGAAGATTTAGTTAGCTACTACTTCAATGTCTTTATGTTGCAACGCAGAGGATATCAGAATAGGCATACTCCCGATGACATTGATAGTGATGACAATGACGAAGAAGCTGGACCACTGAGGAATGTTTTTGGACATCAGATAAAGAATTCTGGACATCAGATGCAGAGTTCTCGAGGCTCCATCTTATTAACCCCCAAAAAGTCACATAAGAAGGGAAAATAG	1986	0.4592	MSMAGWLLFDGGVREEDSGGIVGGSNDNSLCRFERLFAEFFSEICVFNCVLHYPPMLMLADGQDVDLYRLFLVVRGKGGYDAVCNGKLWDSVGEESGMGVSVGSSVELLYSRYLSALDSWMKKIAESKVSPEFGVVDNRDKFGRRLMELQAEVEGLLSGCAEDRVVVAGEDDHNLDGREFCGANGVKGNGDEGGEHRECSDSELPDHDMNEAVLGNSGKGNDAMGGQGGFDGGKMSEEQAVDGANNSGPGSVSGGTKGDDSDDKGLVLDASGGNSDGDSSGHKRKREGSVLDSSSDDSDSPSCKRMREPAMDMLSWVTGVAKNPSDPEVGSIPEKSKWKSYSSQEVWKQVLFFREAMFYRRGSEPSNEQRNWQNQKMHPCLYEDQVGTNYNLRDRLKCDKKLLFGKYTSVRSSSGSSLETENRTPSPRTEGQSELFDSSDAHSGLDKCGTVRIPLGANHQAEIPKWTGVTFESDSKWLGTRIWPQEAVNTRLIERDPIGKGRQGSCGCSEEGSVECVRFHISEKRAKVQLELGKAFYDWNFDRVGEDVRLMWTKEEEKKFEDVVRSNPPSPEKYFWDYIFGAFPDKSREDLVSYYFNVFMLQRRGYQNRHTPDDIDSDDNDEEAGPLRNVFGHQIKNSGHQMQSSRGSILLTPKKSHKKGK*	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac10g01262	661	ProSiteProfiles	ARID domain profile.	34	122	IPR001606	GO:0003677
	Phac10g01262	661	Pfam	ARID/BRIGHT DNA binding domain	55	116	IPR001606	GO:0003677
	Phac10g01262	661	SMART	ELM2_2	453	503	IPR000949	-
	Phac10g01262	661	MobiDBLite	consensus disorder prediction	609	661	-	-
	Phac10g01262	661	MobiDBLite	consensus disorder prediction	411	439	-	-
	Phac10g01262	661	PANTHER	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2	26	658	-	-
	Phac10g01262	661	MobiDBLite	consensus disorder prediction	278	305	-	-
	Phac10g01262	661	CDD	ARID	32	118	-	-
	Phac10g01262	661	MobiDBLite	consensus disorder prediction	411	443	-	-
	Phac10g01262	661	MobiDBLite	consensus disorder prediction	240	254	-	-
	Phac10g01262	661	CDD	SANT	552	599	IPR001005	-
	Phac10g01262	661	SMART	ARID_2	31	118	-	-
	Phac10g01262	661	SUPERFAMILY	ARID-like	38	125	IPR036431	GO:0003677
	Phac10g01262	661	MobiDBLite	consensus disorder prediction	634	651	-	-
	Phac10g01262	661	MobiDBLite	consensus disorder prediction	177	305	-	-
	Phac10g01262	661	SMART	bright_3	35	123	IPR001606	GO:0003677
	Phac10g01262	661	MobiDBLite	consensus disorder prediction	190	208	-	-
	Phac10g01262	661	Gene3D	-	32	130	IPR036431	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac10g01262	Phac-Chr10	35023291	35028174	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Phac10g01262		ARID	3.8e-08	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac10g01262	-		-	pvu:PHAVU_010G100300g	1052.74