Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01261 ATGCTGATGCTGGCTGATGGGCAGGATGTGGATTTGTATAGGTTGTTTTTGGTGGTGAGAGGGAAGGGTGGATACGATGCCGTTTGCAATGGGAAGTTGTGGGATTCGGTTGGGGAGGAGTCTGGGATGGGAGTGAGTGTTGGGTCCTCTGTTGAGTTGCTTTACAGTAGGTACTTGAGTGCTTTGGATTCATGGATGAAGAAAATTGCTGAGAGTAAGGTGTCTCCCGAGTTTGGTGTGGTGGATAATAGGGATAAGTTTGGGAGGCGGTTGATGGAGTTGCAGGCTGAGGTGGAAGGGTTGTTGTCCGGTTGTGCCGAGGATAGGGTGGTTGTGGCTGGAGAAGATGATCACAACTTGGATGGGAGGGAGTTCTGCGGTGCTAATGGGGTGAAAGGTAACGGTGATGAAGGAGGTGAACATAGAGAATGTTCTGATTCGGAGCTGCCGGACCATGACATGAATGAGGCGGTTCTTGGAAACTCGGGTAAGGGAAATGATGCAATGGGAGGGCAGGGAGGGTTTGACGGAGGGAAAATGTCTGAAGAGCAGGCTGTGGATGGGGCTAACAACAGTGGGCCTGGATCGGTGAGTGGAGGTACGAAGGGTGACGACAGTGATGATAAGGGCTTAGTGTTGGATGCATCTGGTGGTAATAGTGATGGTGATAGTTCTGGTCACAAGAGGAAGAGAGAGGGGTCTGTGTTGGATTCATCTAGTGATGATAGTGATAGTCCTAGTTGTAAGAGGATGCGAGAGCCTGCAATGGATATGCTGAGCTGGGTTACCGGTGTTGCAAAGAATCCTAGTGATCCTGAAGTTGGTTCAATACCTGAAAAGTCAAAGTGGAAGTCTTATAGTAGTCAGGAGGTGTGGAAGCAGGTGCTGTTTTTTCGGGAGGCCATGTTTTACAGAAGAGGTTCTGAGCCAAGCAATGAACAACGTAATTGGCAGAATCAGAAGATGCACCCTTGCTTGTATGAAGATCAAGTTGGGACAAACTACAATCTCAGAGACAGGTTGAAATGTGACAAGAAGCTTTTATTTGGGAAATATACATCTGTGCGAAGCTCTTCTGGTTCATCTCTGGAAACTGAGAACAGGACACCAAGTCCTCGTACTGAAGGTCAATCTGAGTTGTTTGATTCCTCCGATGCACATTCAGGTCTTGACAAATGTGGAACAGTGCGCATTCCTTTGGGGGCAAATCATCAAGCTGAAATACCAAAATGGACTGGTGTGACTTTTGAAAGTGATTCTAAGTGGTTAGGGACTCGAATATGGCCACAGGAAGCAGTAAATACCAGACTTATTGAAAGGGACCCCATAGGAAAGGGGAGACAAGGTTCATGTGGCTGCTCAGAAGAAGGTTCTGTTGAGTGTGTAAGATTCCACATTTCAGAGAAAAGGGCTAAAGTTCAGCTGGAATTGGGCAAAGCATTTTATGATTGGAATTTTGATCGGGTTGGTGAAGATGTTAGACTAATGTGGACGAAAGAAGAAGAGAAAAAATTTGAGGATGTGGTACGATCAAACCCTCCATCTCCTGAGAAATATTTCTGGGACTATATCTTTGGGGCTTTTCCTGATAAAAGCAGGGAAGATTTAGTTAGCTACTACTTCAATGTCTTTATGTTGCAACGCAGAGGATATCAGAATAGGCATACTCCCGATGACATTGATAGTGATGACAATGACGAAGAAGCTGGACCACTGAGGAATGTTTTTGGACATCAGATAAAGAATTCTGGACATCAGATGCAGAGTTCTCGAGGCTCCATCTTATTAACCCCCAAAAAGTCACATAAGAAGGGAAAATAG 1821 0.4574 MLMLADGQDVDLYRLFLVVRGKGGYDAVCNGKLWDSVGEESGMGVSVGSSVELLYSRYLSALDSWMKKIAESKVSPEFGVVDNRDKFGRRLMELQAEVEGLLSGCAEDRVVVAGEDDHNLDGREFCGANGVKGNGDEGGEHRECSDSELPDHDMNEAVLGNSGKGNDAMGGQGGFDGGKMSEEQAVDGANNSGPGSVSGGTKGDDSDDKGLVLDASGGNSDGDSSGHKRKREGSVLDSSSDDSDSPSCKRMREPAMDMLSWVTGVAKNPSDPEVGSIPEKSKWKSYSSQEVWKQVLFFREAMFYRRGSEPSNEQRNWQNQKMHPCLYEDQVGTNYNLRDRLKCDKKLLFGKYTSVRSSSGSSLETENRTPSPRTEGQSELFDSSDAHSGLDKCGTVRIPLGANHQAEIPKWTGVTFESDSKWLGTRIWPQEAVNTRLIERDPIGKGRQGSCGCSEEGSVECVRFHISEKRAKVQLELGKAFYDWNFDRVGEDVRLMWTKEEEKKFEDVVRSNPPSPEKYFWDYIFGAFPDKSREDLVSYYFNVFMLQRRGYQNRHTPDDIDSDDNDEEAGPLRNVFGHQIKNSGHQMQSSRGSILLTPKKSHKKGK* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01261 606 MobiDBLite consensus disorder prediction 554 606 - -
Phac10g01261 606 Pfam ARID/BRIGHT DNA binding domain 6 61 IPR001606 GO:0003677
Phac10g01261 606 SUPERFAMILY ARID-like 6 70 IPR036431 GO:0003677
Phac10g01261 606 MobiDBLite consensus disorder prediction 223 250 - -
Phac10g01261 606 MobiDBLite consensus disorder prediction 185 199 - -
Phac10g01261 606 SMART ELM2_2 398 448 IPR000949 -
Phac10g01261 606 SMART bright_3 1 68 IPR001606 GO:0003677
Phac10g01261 606 MobiDBLite consensus disorder prediction 356 384 - -
Phac10g01261 606 Gene3D - 1 75 IPR036431 GO:0003677
Phac10g01261 606 MobiDBLite consensus disorder prediction 135 153 - -
Phac10g01261 606 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 2 603 - -
Phac10g01261 606 MobiDBLite consensus disorder prediction 579 596 - -
Phac10g01261 606 MobiDBLite consensus disorder prediction 122 250 - -
Phac10g01261 606 CDD ARID 6 63 - -
Phac10g01261 606 CDD SANT 497 544 IPR001005 -
Phac10g01261 606 ProSiteProfiles ARID domain profile. 1 67 IPR001606 GO:0003677
Phac10g01261 606 MobiDBLite consensus disorder prediction 356 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01261 Phac-Chr10 35023291 35028174 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phac10g01261 ARID 1.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01261 - - pvu:PHAVU_010G100300g 1052.74