Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01257 ATGCAATCCGGCGGTGGGTCCGGCCGGAACCCCGGAGTGGGGCGGGCGGTGACGTCGTCGGCCGCGGCGTCGCCGACTTCTTCGTCTTCGGCGTCGCAGTTGGGGTTGGACTCTATGCAGCAGCAGCAGCAGCAGATGGGTTCTAGGCAGTCATTTCAACATCAACTGCTTAGAAAACCTGAAGGGAATGAAGCGTTTTTAGCTTATCAAGCAGGGCTTCAAGGGGTATTTGGGAGTAACAGTTTCTCATCTCCTAGTGCCATGCAACTGCCTCAGCAGTCTCGAAAATTGCATCTTGGTTCCAACCAAGAAACCCAGCTAAGGGGTCAAGGTATTGAGCAGCAGATGCTAAATCCTGTCCATCAAGCATACCTTCAATATGCACTCCAGGCTGCACAACAAAAGTCTACTTTGGGAATTCAGTCACAGCAGCAAACTAAAATGGGAATGTTGAACTCTGCATCTCTCAAGGAACAGGAGATGCGTATGGGAAATTTGAAAATGCAGGAAATTATGTCTATGCAGGCAGCGAATCAAGCTCAAGGATCATCCTCTAGGAATTCATCTGAGCTTGTTGCTCGTGGGGACAAGCAAATGGAGCAAGGACAACAAATAGCACCTGATCAGAAGAGTGAAGGAAAGCCTTCAACCCAGGGACCAACTATTGGACATTTAATTCCTGGGAATATGATAAAACCCCCAATGCAAGCACCAGAAACACAGCAGGGCATCCAAAATGTTGTAAACACCCAGATTGCGGTATCTGCACAATTGCAGGCTATGCAGGCATGGGCACGTGAACGTAATATTGATATATCACATCCTGCAAATGCGCACTTAATGGCACAGCTCATTCCACTGATGCAGTCAAGGATGGTCTCACAATCAAAGGTCAATGAGAGCAACATTGGTACTCAGTCATCACCTGTCCCTGTTTCAAAGCAGCAGGTTACTTCTCCAGCAGTTGCAAGTGAGAGTTCAGCACATGCCAATTCTTCGAGTGACATGTCTGGGCAGTCAGGTTCTTCAAAAGCCAGGCAGACAGTTCCACCCAGCCATCTTGGCTCAACAACTGCTGGTATAGCTGGTAACTCCAGTGACATGGCAACACAACAATTCAGTGTTCACGGTAGAGAATCTCAAACCCCTCTAAGGCAGACAGTAGCACTTGGAAATCGAATGCCCTCTATGCATCAGCAGTCTTCTGCCAACACGAACATAGGCGCAGACCATCCATTGAATGGAAAAAATTCATCATCTGGTCCAGAACCTCCTCAAATGCAGTACATGAGGCAGTTAAACCAATCTGCTTCTCAGGCTGGAGGTCCATCAAATGAAGGGGGTTCAGGAAATCTTTCCAAATCTCAAGGACCACCAGCTCAGATGCCTCAGCAACGAACCGGTTTTACAAAACAACAGCTACATGTGCTAAAAGCACAGATACTGGCATTTAGGCGGCTGAAGAAAGGGGAAGGTACTCTGCCTCAAGAACTTCTTAGGGCTATTGTTCCACCATCTCTTGAGACACAGGCACAACAGCCTAATCATGCTGTAGGAGGACAGAACCAAGACAAATCTACTGGAAATATTGTGGCAGAACAAGCAAGCCACACTGAATCCAATGCCAAGGAGTCACAGTCTGTCCCTGCCATTAATGGTCAAAGTTCTTTAAAGCAAGAATCATTTGCCAGAGATGAGAAATCCATTATACCCCCAGTCCATGCTCAAGCTGTTGCACCACCTGTGTCAAAGGAAACTGCTCCAACATTATCTGCTGGAAAGGATGAGCAGAAATCAGTTGGATCCTCGGTTAAGTTGAACCAGGACAGTGAACGTGGAAACAACACTACTCCTGTTAGAAACGAGTTAGCATTAGATAGGGGAAAGGCTATTGTGTCACAGGCTCCTGTATCTGATGCAATGCAAATTAAGAAACCTGCACAAACTACCACTGTTTCCCAGCCAAAGGATGTGGGATCGACTAGAAAATATCATGGACCTTTATTTGATTTTCCTTTCTTTACTAGGAAACATGACTCTTTTGGTTCATCAATGATGCTAAATAACAACAATTTGTCACTGGCATATGATGTCAAGGATCTTCTTTTTGAGGAAGGAATGGAAGTACTTAACAAAAAAAGGACAGAAAATTTAAAGAAGATCGAAGGTTTATTGACAGTAAACTTAGAGAGGAAAAGAATTAGGCCAGATCTTGTTTTGAGGCTGCAAATTGAAGAGAAAAAGCTTCGCCTTGTAGATCTTCAGGCACGCTTAAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGAAAGTTTGTTAGGCTGTGTGAACGTCAGCGCATGGAGCTTGCTAGACAAGTGCAGGCATCTCAGAGAGCAGTTAGGGAGAAGCAACTCAAATCAATATTTCAGTGGCGCAAGAAGCTGCTTGAGGCTCACTGGACCATCCGTGATGCCCGTACTGCCCGCAACAGGGGGGTTGCAAAATATCATGAGAAGATGTTGCGGGAGTTCTCAAAACGGAAAGATGATGACAGAAACAAAAGGCTGGAAGCCTTAAAAAACAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAAACTAGCATCCCTGGTGATGCTGCAGAGAGATACGCTGTTCTTTCAACTTTCTTAAGCCAGACTGAAGAGTATCTACACAAGTTAGGAAGTAAGATAACGGCTGCTAAAAATCAACAGGAAGTGGAGGAAGCAGCAAAAGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCAGCTGCAGCTTGTGCTGGAGAGGAAGTGATGATTAGAAATCGCTTTCTGGAGATGAATGCCCCTAGAGACAGTTCGTCTGTCAACAAATATTACAACCTTGCTCATGCTGTGAGTGAAACAGTCATAAGGCAACCATCAATGTTACGAGCTGGAACATTGAGAGACTATCAGCTTGTTGGTTTGCAATGGATGCTTTCGTTGTATAACAACAAGTTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGCAAAACTGTGCAGGTTATGGCATTGATTGCTTATTTGATGGAATTTAAAGGAAACTATGGCCCACATCTTATAATAGTACCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGCTTTATACTTGGTTACCATCTGTTTCTTGCATTTTTTATGTTGGAAGCAAGGATCACCGGTCAAAATTATTTTCCCAAGAGGTTTGTGCTATGAAATTTAATGTCCTCGTGACAACTTACGAGTTCATCATGTATGACCGGTCAAAACTATCAAAAATTGACTGGAAGTATATCATAATTGATGAAGCACAGAGAATGAAGGATAGAGATTCTGTTTTAGCTCGTGACCTTGATAGATATCGTTGCCAAAGACGTCTGCTTTTGACAGGAACACCATTACAGAATGATTTGAAAGAACTCTGGTCTCTCTTAAATTTACTTCTTCCTGAAGTTTTCGATAATAGGAAAGCCTTTCATGATTGGTTCTCTAAACCATTTCAAAAGGAAGGTCCCACTCAAAATGTAGAGGATGATTGGCTTGAGACAGAGAAAAAAGTTATTATTATCCATCGACTTCATCAGATTTTGGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGATGTTGAAGGCTCCCTTCCACCAAAGGTTTCCATAGTTTTAAAATGTAAAATGTCAGCTGTCCAAAGTGCCATTTATGACTGGGTCAAATCAACTGGTACCCTTCGTCTTGATCCCGAGGATGAGAAACGCAAGCTTCATAGGAATCCATCATATCAGGTGAAGCAATATAAAACTTTAAACAACAGATGCATGGAGCTGCGTAAGACTTGCAATCATCCATTGCTTAATTACCCATTCTTCAGTGACCTATCCAAGGATTTCATTGTAAGATCTTGTGGAAAATTGTGGATCCTGGATAGGATTCTCATAAAACTTCAGAGAACTGGGCATCGAGTTCTACTTTTCAGTACCATGACAAAACTTCTAGATATCTTGGAAGAATATCTACAGTGGCGAAGACTTGTTTACAGAAGAATTGATGGGACAACAAGTTTGGAAGACCGTGAATCAGCTATAGTGGACTTCAATAGCCCTGATTCAGACTGTTTCATCTTTCTGCTTAGTATTCGAGCTGCTGGACGAGGGCTTAACCTTCAGTCTGCTGACACGGTTGTCATCTATGATCCTGATCCAAATCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCACATCGTATTGGACAGACAAGAGAAGTCAAAGTTATATATATGGAAGCTGTTGTTGACAAAATCTCTAGTCATCTGAAGGAGGATGAGCTGAGAAGTGGAGGCACTGTTGATATGGAGGATGAACTTGCAGGTAAGGACCGCTACATTGGGTCCATTGAGAGCCTCATAAGGAACAATATTCAACAATATAAGATAGATATGGCTGATGAGGTTATTAATGCTGGACGGTTTGATCAAAGAACAACACATGAAGAGAGGCGATTGACATTGGAGACATTATTACATGATGAAGAAAGGTATCAAGAAACTGTCCATGATGTTCCCTCACTACAGGAGGTAAATCGCATGATTGCCAGAAGTAAAGAGGAAATTGAACTGTTTGATCAAATGGATGATGAATTCGATTGGATTGAAGAGATGACACGATATGATAATGTGCCTAAGTGGCTTCGAGCCAATACAAGAGAAGTAAATACTGCTATTGCTGCTCTATCAAAGAGACCATCAAAGAACACTTTATTGGGTGGTAATATTGCCATGGAATCAAGTGAATTTGGTTCTGAAAGAAAAAGAGGACGACCAAAGGGAAAAAAGCATCCTAATTATAAAGAGTTGGATGATGAAATTTTGGAATACTCTGAAGTAAGCTCTGATGAAAGAAATGGATATGCACATGAAGAAGGGGAAATAGGAGAATTTGATGATGACGGGTATAGTGTGGCTGATGGAGCTCAGACTATTGATAAAGATCAATTGGAAGATGGTTTGCTTGGTGATGCTAGATTTGAATTTCCTCAATCTTTAGATAGCGCTAGGAATACTCAGATGGTTGAAGAAGCTGGTTCCTCGGGGTCATCCTCGGACAGTCAAAGATTGACACAGGTGGTATCACCATCAGTCTCCTCTCAGAAATTTGGTTCCCTCTCTGCATTAGATGCCCGGCCAGGTTCCATTTCAAAAAGGATGACAGATGAGTTAGAGGAAGGGGAAATTGCTGTATCTGGTGATTCTCACATGGACCATCAACAGTCTGGAAGTTGGATTCATGATCGTGAGGAAGGTGAGGATGAGCAAGTTCTGCAGAAACCAAAGATTAAACGCAAACGCAGTCTTCGTGTTCGACCCCGACATCCCACTGAAAGACCTGAAGAAAAATCTGGTAGTGAAATGACATCTCATTTGGCAGTCCAAGCAGACCACAAATATCAAGCGCAACTTAGGACTGACCCAGAATCCAAAGCTCTTGGTGACTCAAATGCCAGCAGGCATGAACAAAACACACCATCATTAAAAAATAAACGAACTTTGCCTTCTAGGAGAGTAGCCAATACATCCAAATTGCATGGATCACCGAAGTCTAGTCGGTTGAATTGCATGTCTTTACCTTCACAAGATGGTGGTGAACACTCCAGAGAAAGCTGGGAAGGGAAACCTATTAGTGGATCTTCAGCTCATGGCACTAAGATGACTGAAATTATCCAGAGAAGGTGCAAAAATGTAATTAGCAAGCTCCAAAGGAGAATAGACAAAGAAGGCCATGAGATTGTACCATTGTTAACGGATTTGTGGAAGAGGATTGAAAATTCTGGAAACAGCCTGTTAGATCTACGAAAAATTGATCAGCGAATTGATAAATTTGAGTATAATGGAGCAACAGAGCTTGTATTTGATGTGCAGTTTATGTTGAAGAGTGCAATGCATTTTTATGGTTTTTCACACGAGGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGATATCTTGAAAATTGCCTTCCCTGATACGGACTTTCGAGATGCAAGAAGTGCACTTTCTTTCTCCGGTCAAGCTGCTACTGGTACAGTAGCATCCCCAAGGCAGGCGTCTGTTAGCCAAAGCAAGAGGCACAGACTGATAAATGATATGGAAACTGAGTCATACCCTTCACAGAAGTCACTGCAACGTGGATCAGCTTCTAGTGGTGAAAACAACAGGATTAAAGTCCAGTTGCCACCGAGGGAATCAAGAACTGGAAGCGGTGGGGGCAGCAGCACCAGGGAGCAACCTCAGCAGGAGGATTCTTCACTGCTCGCTCATCCAGGTGAACTGGTTGTATGCAAGAAGAGAAGAAATGACAGGGAGAAATCTCTGGCGAAATCCAAGACTGGTCCTGTTTCACCATCTAGCATGAGAAGTCCAGGGTCATTGAAGGATGCTAGATTAACTCAACAGGCTTCCCATGCACAAGGGTGGGCTGGGCAGCCATCACAACAGCCGAATGGATCTGGTGGCTCAGTTGGCTGGGCAAACCCTGTAAAGAGGCTAAGAACAGATTCTGGGAAGAGAAGACCAAGCCATACATAG 6642 0.4347 MQSGGGSGRNPGVGRAVTSSAAASPTSSSSASQLGLDSMQQQQQQMGSRQSFQHQLLRKPEGNEAFLAYQAGLQGVFGSNSFSSPSAMQLPQQSRKLHLGSNQETQLRGQGIEQQMLNPVHQAYLQYALQAAQQKSTLGIQSQQQTKMGMLNSASLKEQEMRMGNLKMQEIMSMQAANQAQGSSSRNSSELVARGDKQMEQGQQIAPDQKSEGKPSTQGPTIGHLIPGNMIKPPMQAPETQQGIQNVVNTQIAVSAQLQAMQAWARERNIDISHPANAHLMAQLIPLMQSRMVSQSKVNESNIGTQSSPVPVSKQQVTSPAVASESSAHANSSSDMSGQSGSSKARQTVPPSHLGSTTAGIAGNSSDMATQQFSVHGRESQTPLRQTVALGNRMPSMHQQSSANTNIGADHPLNGKNSSSGPEPPQMQYMRQLNQSASQAGGPSNEGGSGNLSKSQGPPAQMPQQRTGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLETQAQQPNHAVGGQNQDKSTGNIVAEQASHTESNAKESQSVPAINGQSSLKQESFARDEKSIIPPVHAQAVAPPVSKETAPTLSAGKDEQKSVGSSVKLNQDSERGNNTTPVRNELALDRGKAIVSQAPVSDAMQIKKPAQTTTVSQPKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMLNNNNLSLAYDVKDLLFEEGMEVLNKKRTENLKKIEGLLTVNLERKRIRPDLVLRLQIEEKKLRLVDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRAVREKQLKSIFQWRKKLLEAHWTIRDARTARNRGVAKYHEKMLREFSKRKDDDRNKRLEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSTFLSQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAHAVSETVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYTWLPSVSCIFYVGSKDHRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGPTQNVEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLKCKMSAVQSAIYDWVKSTGTLRLDPEDEKRKLHRNPSYQVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKDFIVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKISSHLKEDELRSGGTVDMEDELAGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEIELFDQMDDEFDWIEEMTRYDNVPKWLRANTREVNTAIAALSKRPSKNTLLGGNIAMESSEFGSERKRGRPKGKKHPNYKELDDEILEYSEVSSDERNGYAHEEGEIGEFDDDGYSVADGAQTIDKDQLEDGLLGDARFEFPQSLDSARNTQMVEEAGSSGSSSDSQRLTQVVSPSVSSQKFGSLSALDARPGSISKRMTDELEEGEIAVSGDSHMDHQQSGSWIHDREEGEDEQVLQKPKIKRKRSLRVRPRHPTERPEEKSGSEMTSHLAVQADHKYQAQLRTDPESKALGDSNASRHEQNTPSLKNKRTLPSRRVANTSKLHGSPKSSRLNCMSLPSQDGGEHSRESWEGKPISGSSAHGTKMTEIIQRRCKNVISKLQRRIDKEGHEIVPLLTDLWKRIENSGNSLLDLRKIDQRIDKFEYNGATELVFDVQFMLKSAMHFYGFSHEVRTEARKVHDLFFDILKIAFPDTDFRDARSALSFSGQAATGTVASPRQASVSQSKRHRLINDMETESYPSQKSLQRGSASSGENNRIKVQLPPRESRTGSGGGSSTREQPQQEDSSLLAHPGELVVCKKRRNDREKSLAKSKTGPVSPSSMRSPGSLKDARLTQQASHAQGWAGQPSQQPNGSGGSVGWANPVKRLRTDSGKRRPSHT* 2214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01257 2213 Coils Coil 1541 1561 - -
Phac10g01257 2213 Pfam QLQ 469 502 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phac10g01257 2213 MobiDBLite consensus disorder prediction 202 218 - -
Phac10g01257 2213 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1325 1502 IPR001650 -
Phac10g01257 2213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1228 1566 IPR027417 -
Phac10g01257 2213 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1006 1171 IPR014001 -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 296 364 - -
Phac10g01257 2213 SMART QLQ_2 467 504 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phac10g01257 2213 SMART bromo_6 1917 2026 IPR001487 GO:0005515
Phac10g01257 2213 MobiDBLite consensus disorder prediction 590 618 - -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 579 618 - -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 1 53 - -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 175 240 - -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 395 469 - -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 534 553 - -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 2102 2121 - -
Phac10g01257 2213 FunFam ATP-dependent helicase BRM 1234 1444 - -
Phac10g01257 2213 PANTHER SNF2/RAD54 HELICASE FAMILY 726 1709 - -
Phac10g01257 2213 Pfam Helicase conserved C-terminal domain 1324 1435 IPR001650 -
Phac10g01257 2213 SUPERFAMILY Bromodomain 1965 2027 IPR036427 GO:0005515
Phac10g01257 2213 SMART ultradead3 990 1179 IPR014001 -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 1842 1919 - -
Phac10g01257 2213 Gene3D - 796 869 - -
Phac10g01257 2213 SMART helicmild6 1351 1435 IPR001650 -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 1615 1639 - -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 2041 2213 - -
Phac10g01257 2213 Gene3D - 1234 1444 IPR027417 -
Phac10g01257 2213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 974 1224 IPR027417 -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 2147 2191 - -
Phac10g01257 2213 Gene3D - 985 1233 IPR038718 -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 1843 1898 - -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 2041 2061 - -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 2069 2092 - -
Phac10g01257 2213 Pfam SNF2-related domain 997 1301 IPR000330 GO:0005524|GO:0140658
Phac10g01257 2213 MobiDBLite consensus disorder prediction 1762 1824 - -
Phac10g01257 2213 ProSiteProfiles QLQ domain profile. 468 504 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phac10g01257 2213 CDD SF2_C_SNF 1320 1445 - -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 2129 2145 - -
Phac10g01257 2213 Coils Coil 744 768 - -
Phac10g01257 2213 Gene3D - 1911 2036 IPR036427 GO:0005515
Phac10g01257 2213 MobiDBLite consensus disorder prediction 175 194 - -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 1774 1795 - -
Phac10g01257 2213 FunFam Brahma1 1919 2036 - -
Phac10g01257 2213 MobiDBLite consensus disorder prediction 1706 1739 - -
Phac10g01257 2213 FunFam ATP-dependent helicase BRM 985 1233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01257 Phac-Chr10 34976390 34989769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01257 1015 1451 RAD5 or RAD16-like Gene Family AT1G02670 26.430 5.39e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac10g01257 SNF2_N 2.2e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01257 - - gmx:100807104 3842.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01257 10 34976390 34989769 Phac10g01257 10 34976390 34989769 ECH
Phac8g00894 8 5866670 5879259 Phac10g01257 10 34976390 34989769 PCT