Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01201 ATGGATCGAGGAGACCAAATGACATTATCTGGCTCTGCATCTTACTACATGCAGAGAGGAATACCTGGTGCTGGAACTCAGCCTGAACTGCACAACTCGCCTAATATTCGACCATTGTCTAATCCTAATTTACCATTTCAATCAAGCATTGGTGGTGGTGGTGGTACCATTGGATCTACATTACCATTGGAATCTTCAGGAATTTCATCTCCATGTGTGAATGTGAGTGTTCCTTCTGGTGCACTGGCTGTGGAATCTGTCAAAAGGAAGAGAGGAAGGCCTAGAAAATACGGGCCTGATGGATCTGTGTCGTTGGCATTGACTCCAACACCAGCAAGTCATCCTGGAGCCCTGGCACAAGGCCAGAAACGAGGTAGAGGGCGCCCACCAGGATCAGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGCACTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCACATCATTACCATAGCAGTTGGAGAAGACGTTGCCACAAAAATCATGGCATTTTCTCAGCAGGGGCCAAGAGCTATATGTATTTTGTCAGCCAATGGTGCTGTGTCTACTGTGACACTTCGTCAGCCTTCAACATCAGGTGGCACTGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCAGGCTCTTACTTGGTTGCCGACGGTGGCGGCTCCCGCAATCGAACCGGTGGATTAAGTGTTTCCCTTGCAAGCCCTGATGGTCGTGTCATAGGCGGAGGAGTTGGTGGAGTGCTTATTGCTGCAAGTCAAGTTCAGGTGATAGTTGGAAGCTTTACATGGGGTGGATCAAAGACAAAGATAAAGAAAAAAGAACCTTCAGAAGTGGCAGAAGTTGCTATAGAGAATGATCATCAGACAGTTCATAATCCAGTTGCAGTGAATAGCATCTCCCCGAATCAAAATCTTACTCCAACCTCATCTTTAAGTCCGTGGCCAGCATCACGACCATTGGACATGCGCAATTCTCATATTGACATTGATTTAATGCGCGGGTGA 1026 0.4747 MDRGDQMTLSGSASYYMQRGIPGAGTQPELHNSPNIRPLSNPNLPFQSSIGGGGGTIGSTLPLESSGISSPCVNVSVPSGALAVESVKRKRGRPRKYGPDGSVSLALTPTPASHPGALAQGQKRGRGRPPGSGKKQQLASLGALMSGSAGMGFTPHIITIAVGEDVATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLVADGGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIAASQVQVIVGSFTWGGSKTKIKKKEPSEVAEVAIENDHQTVHNPVAVNSISPNQNLTPTSSLSPWPASRPLDMRNSHIDIDLMRG* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01201 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 54 316 IPR039605 GO:0003680
Phac10g01201 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 271 - -
Phac10g01201 341 MobiDBLite consensus disorder prediction 305 322 - -
Phac10g01201 341 FunFam AT-hook motif nuclear-localized protein 1-like 155 286 - -
Phac10g01201 341 ProSiteProfiles PPC domain profile profile. 149 291 IPR005175 -
Phac10g01201 341 CDD DUF296 154 268 IPR005175 -
Phac10g01201 341 Gene3D - 155 298 - -
Phac10g01201 341 MobiDBLite consensus disorder prediction 305 324 - -
Phac10g01201 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 269 IPR005175 -
Phac10g01201 341 MobiDBLite consensus disorder prediction 28 62 - -
Phac10g01201 341 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Phac10g01201 341 SMART AT_hook_2 88 100 IPR017956 GO:0003677
Phac10g01201 341 MobiDBLite consensus disorder prediction 86 138 - -
Phac10g01201 341 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01201 Phac-Chr10 34570935 34576759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01201 1 341 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 51.247 5.19e-89 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01201 - - gmx:100799791 576.63