Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01200 ATGGATCGAGGAGACCAAATGACATTATCTGGCTCTGCATCTTACTACATGCAGAGAGGAATACCTGGTGCTGGAACTCAGCCTGAACTGCACAACTCGCCTAATATTCGACCATTGTCTAATCCTAATTTACCATTTCAATCAAGCATTGGTGGTGGTGGTGGTACCATTGGATCTACATTACCATTGGAATCTTCAGGAATTTCATCTCCATGTGTGAATGTGAGTGTTCCTTCTGGTGCACTGGCTGTGGAATCTGTCAAAAGGAAGAGAGGAAGGCCTAGAAAATACGGGCCTGATGGATCTGTGTCGTTGGCATTGACTCCAACACCAGCAAGTCATCCTGGAGCCCTGGCACAAGGCCAGAAACGAGGTAGAGGGCGCCCACCAGGATCAGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGCACTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCACATCATTACCATAGCAGTTGGAGAAGACGTTGCCACAAAAATCATGGCATTTTCTCAGCAGGGGCCAAGAGCTATATGTATTTTGTCAGCCAATGGTGCTGTGTCTACTGTGACACTTCGTCAGCCTTCAACATCAGGTGGCACTGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCAGGCTCTTACTTGGTTGCCGACGGTGGCGGCTCCCGCAATCGAACCGGTGGATTAAGTGTTTCCCTTGCAAGCCCTGATGGTCGTGTCATAGGCGGAGGAGTTGGTGGAGTGCTTATTGCTGCAAGTCAAGTTCAGGTAAATGCATTTTATTGCTTCCATCATCATAATCATTCTCATGTCAAAATCAGGAACTTGTTGAATTTGGATGTTGTATTACCACAGGTGATAGTTGGAAGCTTTACATGGGGTGGATCAAAGACAAAGATAAAGAAAAAAGAACCTTCAGAAGTGGCAGAAGTTGCTATAGAGAATGATCATCAGACAGTTCATAATCCAGTTGCAGTGAATAGCATCTCCCCGAATCAAAATCTTACTCCAACCTCATCTTTAAGTCCGTGGCCAGCATCACGACCATTGGACATGCGCAATTCTCATATTGACATTGATTTAATGCGCGGGTGA 1113 0.4627 MDRGDQMTLSGSASYYMQRGIPGAGTQPELHNSPNIRPLSNPNLPFQSSIGGGGGTIGSTLPLESSGISSPCVNVSVPSGALAVESVKRKRGRPRKYGPDGSVSLALTPTPASHPGALAQGQKRGRGRPPGSGKKQQLASLGALMSGSAGMGFTPHIITIAVGEDVATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLVADGGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIAASQVQVNAFYCFHHHNHSHVKIRNLLNLDVVLPQVIVGSFTWGGSKTKIKKKEPSEVAEVAIENDHQTVHNPVAVNSISPNQNLTPTSSLSPWPASRPLDMRNSHIDIDLMRG* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01200 370 MobiDBLite consensus disorder prediction 28 62 - -
Phac10g01200 370 Gene3D - 155 273 - -
Phac10g01200 370 MobiDBLite consensus disorder prediction 334 351 - -
Phac10g01200 370 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Phac10g01200 370 SMART AT_hook_2 88 100 IPR017956 GO:0003677
Phac10g01200 370 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 271 - -
Phac10g01200 370 CDD DUF296 154 243 IPR005175 -
Phac10g01200 370 MobiDBLite consensus disorder prediction 334 353 - -
Phac10g01200 370 ProSiteProfiles PPC domain profile profile. 149 291 IPR005175 -
Phac10g01200 370 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 55 345 IPR039605 GO:0003680
Phac10g01200 370 MobiDBLite consensus disorder prediction 1 62 - -
Phac10g01200 370 MobiDBLite consensus disorder prediction 86 138 - -
Phac10g01200 370 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 264 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01200 Phac-Chr10 34570935 34576759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01200 1 263 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 56.786 1.13e-82 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01200 - - gmx:100799791 561.222