LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac10g01184	ATGAACCACCACAACAATAGAGCGAGGTACCCTCCCGGGATGGGGCTTGGGCGAGGAGGTTTCCATCCGAACGTCGGCCACAACCCCAACCTCAACCAGAACCCCGGCCTAAACCAGAATCATGCGTTTCAGCCTCGCCCACCGTACCAGCAACAACCGCATTACGTGCAGAGGCAGTTGATCCAACAGCCGCAGCAGCAGCAGTGGCTGAGAAGAGACGCCAATGCCGTCGATGAGGTCGAGAAGACCGTGCAGTCTGAAGCCGTGGATTCGAGTTCACAAGATTGGAAAGCAAGACTCAAGATTCCACCAGCTGATACACGCTATAAGACTGAGGATGTAACAGCAACAAAAGGAAATGAATTTGAAGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGCAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGACCAAGATAATAATGTTATTCAAGTTGTTATACTGGTCCCAACCCGAGAATTGGCTTTGCAGACTTCTCAAGTGTGTAAAGAACTTGGAAAGCACTTGCAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATAATGCGCTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTGGCTAAGAAAGGTGTTTGTATTATGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTGTCCCCAGAGTTCCAACCTTCTATAGAGCAGCTGATTCATTTTCTTCCTACAAACCGTCAAATCTTGATGTTTTCAGCAACATTTCCAGTTACTGTAAAGGATTTCAAAGATAGGTATCTTCATAAACCTTATGTCATCAACCTTATGGATGAGCTAACTCTGAAGGGTATTACGCAATTTTATGCATTCGTGGAAGAGAGACAGAAAGTCCATTGCCTAAATACTCTATTTTCTAAGCTGCAAATAAACCAGTCTATCATCTTCTGCAACTCAGTGAATCGAGTGGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTACATTCATGCAAAGATGTTGCAAGACCATCGTAACAGAGTGTTTCATGACTTCCGCAATGGTGCATGTCGAAATCTTGTCTGTACTGATCTTTTTACTAGAGGAATAGACATTCAGGCTGTTAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAGACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGGCTGGCAGTGAACTTGATTACATATGAGGATCGCTTTAATTTATATAGGATTGAACAGGAACTTGGAACTGAAATAAAGCAGATTCCACCGCAAATTGATCAGGCAATTTATTGCCGGTAA	1485	0.4263	MNHHNNRARYPPGMGLGRGGFHPNVGHNPNLNQNPGLNQNHAFQPRPPYQQQPHYVQRQLIQQPQQQQWLRRDANAVDEVEKTVQSEAVDSSSQDWKARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCIMKDCSMLVMDEADKLLSPEFQPSIEQLIHFLPTNRQILMFSATFPVTVKDFKDRYLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR*	495

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac10g01184	494	Gene3D	-	76	324	IPR027417	-
	Phac10g01184	494	SMART	ultradead3	139	335	IPR014001	-
	Phac10g01184	494	MobiDBLite	consensus disorder prediction	26	53	-	-
	Phac10g01184	494	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	151	321	IPR014001	-
	Phac10g01184	494	Pfam	Helicase conserved C-terminal domain	346	452	IPR001650	-
	Phac10g01184	494	CDD	SF2_C_DEAD	332	461	-	-
	Phac10g01184	494	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	65	493	-	-
	Phac10g01184	494	MobiDBLite	consensus disorder prediction	1	53	-	-
	Phac10g01184	494	FunFam	ATP-dependent RNA helicase DDX6	325	494	-	-
	Phac10g01184	494	Pfam	DEAD/DEAH box helicase	145	309	IPR011545	GO:0003676\|GO:0005524
	Phac10g01184	494	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	331	491	IPR001650	-
	Phac10g01184	494	SMART	helicmild6	371	452	IPR001650	-
	Phac10g01184	494	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	474	IPR027417	-
	Phac10g01184	494	CDD	DEADc_DDX6	122	322	-	-
	Phac10g01184	494	Gene3D	-	325	494	IPR027417	-
	Phac10g01184	494	FunFam	ATP-dependent RNA helicase DDX6	101	324	-	-
	Phac10g01184	494	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	120	148	IPR014014	GO:0003724
	Phac10g01184	494	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	267	275	IPR000629	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac10g01184	Phac-Chr10	33396799	33403682	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac10g01184	120	491	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.235	2.25e-94	290

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac10g01184	K12614		-	gmx:106794117	920.998