Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01173 ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCATGTGACAAGACTGTCTATGTGGTTGACTTGTTAACCCTTGAAGGCATTCCTTACCATAAGAACTGCTTCAAATGCAGTCACTGCAAGGGATATCTCACGATGTGCACATACTCCTCAATGGATGGAGTTCTCTATTGCAAGCCTCATTTTGAACAACTCTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCGCAAAGTCTACTGAGAAGCAAAACGATATTAATAGAACCCCTAGCAAGCTGTCTTCAATGTTCAGTGGAACCCTGGACAAATGTGCAGTATGCTCAAAAACAGTGTACCCTCTTGAAAAGGTGTCACTGGAAGGGGAATGCTACCACAAGACTTGTTTTAGGTGTGCTCATGCAGGGTGCCCTCTGACACATTCAAACTATGCTGCCCTTGATGGTGTTGTCTACTGCAGAGTCCACTTTGCACAACTGTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAAGAGGACTGGTTCATCTACACCTCCTGAGCCTCTATTTGAGGAGCCATCACATCCAGCACCAGCAGCAGAATCTGAGGAACCTCCAGTAGTAGAAGATGAAGAAAAAGAAAAAGAAAAAGAAAAAGAAGAAGAAGAAGAAGAAGAGAAAGAGAGCTCTTGA 687 0.4396 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGYLTMCTYSSMDGVLYCKPHFEQLFKESGNFSKNFAKSTEKQNDINRTPSKLSSMFSGTLDKCAVCSKTVYPLEKVSLEGECYHKTCFRCAHAGCPLTHSNYAALDGVVYCRVHFAQLFMEKGNYSHVLQAAAHKRTGSSTPPEPLFEEPSHPAPAAESEEPPVVEDEEKEKEKEKEEEEEEEKESS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01173 228 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Phac10g01173 228 Gene3D Cysteine Rich Protein 5 100 - -
Phac10g01173 228 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Phac10g01173 228 PANTHER OS06G0237300 PROTEIN 6 82 - -
Phac10g01173 228 MobiDBLite consensus disorder prediction 202 228 - -
Phac10g01173 228 FunFam LIM domain and actin-binding 1 98 168 - -
Phac10g01173 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Phac10g01173 228 SMART lim_4 9 61 IPR001781 -
Phac10g01173 228 SMART lim_4 103 155 IPR001781 -
Phac10g01173 228 FunFam LIM domain and actin-binding 1 4 74 - -
Phac10g01173 228 Gene3D Cysteine Rich Protein 101 168 - -
Phac10g01173 228 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Phac10g01173 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Phac10g01173 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Phac10g01173 228 Pfam LIM domain 104 159 IPR001781 -
Phac10g01173 228 Pfam LIM domain 10 65 IPR001781 -
Phac10g01173 228 Coils Coil 205 228 - -
Phac10g01173 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Phac10g01173 228 CDD LIM1_SF3 6 68 - -
Phac10g01173 228 MobiDBLite consensus disorder prediction 175 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01173 Phac-Chr10 33252873 33254973 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Phac10g01173 LIM 1.4e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01173 - K09377 gmx:100305845 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01173 10 33252873 33254973 Phac10g01173 10 33252873 33254973 ECH
Phac8g00988 8 6696048 6698233 Phac10g01173 10 33252873 33254973 PCT