Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac10g01172 | ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCATGTGACAAGACTGTCTATGTGGTTGACTTGTTAACCCTTGAAGGCATTCCTTACCATAAGAACTGCTTCAAATGCAGTCACTGCAAGGGATATCTCACGATGTGCACATACTCCTCAATGGATGGAGTTCTCTATTGCAAGCCTCATTTTGAACAACTCTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCGCAAAGTCTACTGAGAAGCAAAACGATATTCAGAATAGAACCCCTAGCAAGCTGTCTTCAATGTTCAGTGGAACCCTGGACAAATGTGCAGTATGCTCAAAAACAGTGTACCCTCTTGAAAAGGTGTCACTGGAAGGGGAATGCTACCACAAGACTTGTTTTAGGTGTGCTCATGCAGGGTGCCCTCTGACACATTCAAACTATGCTGCCCTTGATGGTGTTGTCTACTGCAGAGTCCACTTTGCACAACTGTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAAGAGGACTGGTTCATCTACACCTCCTGAGCCTCTATTTGAGGAGCCATCACATCCAGCACCAGCAGCAGAATCTGAGGAACCTCCAGTAGTAGAAGATGAAGAAAAAGAAAAAGAAAAAGAAAAAGAAGAAGAAGAAGAAGAAGAGAAAGAGAGCTCTTGA | 690 | 0.4406 | MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGYLTMCTYSSMDGVLYCKPHFEQLFKESGNFSKNFAKSTEKQNDIQNRTPSKLSSMFSGTLDKCAVCSKTVYPLEKVSLEGECYHKTCFRCAHAGCPLTHSNYAALDGVVYCRVHFAQLFMEKGNYSHVLQAAAHKRTGSSTPPEPLFEEPSHPAPAAESEEPPVVEDEEKEKEKEKEEEEEEEKESS* | 230 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac10g01172 | 229 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 97 | 130 | - | - | |
Phac10g01172 | 229 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
Phac10g01172 | 229 | Gene3D | Cysteine Rich Protein | 5 | 101 | - | - | |
Phac10g01172 | 229 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
Phac10g01172 | 229 | ProSiteProfiles | LIM domain profile. | 103 | 163 | IPR001781 | - | |
Phac10g01172 | 229 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
Phac10g01172 | 229 | SMART | lim_4 | 104 | 156 | IPR001781 | - | |
Phac10g01172 | 229 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
Phac10g01172 | 229 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
Phac10g01172 | 229 | MobiDBLite | consensus disorder prediction | 176 | 229 | - | - | |
Phac10g01172 | 229 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
Phac10g01172 | 229 | Pfam | LIM domain | 105 | 160 | IPR001781 | - | |
Phac10g01172 | 229 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 131 | 170 | - | - | |
Phac10g01172 | 229 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
Phac10g01172 | 229 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
Phac10g01172 | 229 | PANTHER | OS06G0237300 PROTEIN | 6 | 83 | - | - | |
Phac10g01172 | 229 | FunFam | LIM domain and actin-binding 1 | 99 | 169 | - | - | |
Phac10g01172 | 229 | Gene3D | Cysteine Rich Protein | 102 | 169 | - | - | |
Phac10g01172 | 229 | MobiDBLite | consensus disorder prediction | 203 | 229 | - | - | |
Phac10g01172 | 229 | Coils | Coil | 206 | 229 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac10g01172 | Phac-Chr10 | 33252873 | 33254973 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LIM | Phac10g01172 | LIM | 1.4e-09 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac10g01172 | - | K09377 | gmx:100305845 | 366.311 |