Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01172 ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCATGTGACAAGACTGTCTATGTGGTTGACTTGTTAACCCTTGAAGGCATTCCTTACCATAAGAACTGCTTCAAATGCAGTCACTGCAAGGGATATCTCACGATGTGCACATACTCCTCAATGGATGGAGTTCTCTATTGCAAGCCTCATTTTGAACAACTCTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCGCAAAGTCTACTGAGAAGCAAAACGATATTCAGAATAGAACCCCTAGCAAGCTGTCTTCAATGTTCAGTGGAACCCTGGACAAATGTGCAGTATGCTCAAAAACAGTGTACCCTCTTGAAAAGGTGTCACTGGAAGGGGAATGCTACCACAAGACTTGTTTTAGGTGTGCTCATGCAGGGTGCCCTCTGACACATTCAAACTATGCTGCCCTTGATGGTGTTGTCTACTGCAGAGTCCACTTTGCACAACTGTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAAGAGGACTGGTTCATCTACACCTCCTGAGCCTCTATTTGAGGAGCCATCACATCCAGCACCAGCAGCAGAATCTGAGGAACCTCCAGTAGTAGAAGATGAAGAAAAAGAAAAAGAAAAAGAAAAAGAAGAAGAAGAAGAAGAAGAGAAAGAGAGCTCTTGA 690 0.4406 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGYLTMCTYSSMDGVLYCKPHFEQLFKESGNFSKNFAKSTEKQNDIQNRTPSKLSSMFSGTLDKCAVCSKTVYPLEKVSLEGECYHKTCFRCAHAGCPLTHSNYAALDGVVYCRVHFAQLFMEKGNYSHVLQAAAHKRTGSSTPPEPLFEEPSHPAPAAESEEPPVVEDEEKEKEKEKEEEEEEEKESS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01172 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 130 - -
Phac10g01172 229 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Phac10g01172 229 Gene3D Cysteine Rich Protein 5 101 - -
Phac10g01172 229 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Phac10g01172 229 ProSiteProfiles LIM domain profile. 103 163 IPR001781 -
Phac10g01172 229 SMART lim_4 9 61 IPR001781 -
Phac10g01172 229 SMART lim_4 104 156 IPR001781 -
Phac10g01172 229 FunFam LIM domain and actin-binding 1 4 74 - -
Phac10g01172 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Phac10g01172 229 MobiDBLite consensus disorder prediction 176 229 - -
Phac10g01172 229 Pfam LIM domain 10 65 IPR001781 -
Phac10g01172 229 Pfam LIM domain 105 160 IPR001781 -
Phac10g01172 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 170 - -
Phac10g01172 229 CDD LIM1_SF3 6 68 - -
Phac10g01172 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Phac10g01172 229 PANTHER OS06G0237300 PROTEIN 6 83 - -
Phac10g01172 229 FunFam LIM domain and actin-binding 1 99 169 - -
Phac10g01172 229 Gene3D Cysteine Rich Protein 102 169 - -
Phac10g01172 229 MobiDBLite consensus disorder prediction 203 229 - -
Phac10g01172 229 Coils Coil 206 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01172 Phac-Chr10 33252873 33254973 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Phac10g01172 LIM 1.4e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01172 - K09377 gmx:100305845 366.311