Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01155 ATGGAAGCTGCAACAGTAGCAACCTCTTCTCAGAGAAAGCTGAAGCGGAAGCGAACCCTAGCAAAAAGCGATCCTGAACTCGACCGTCTCAACTCGCTTCCGTGGAACTCTTCTCTTCCTCAAAACGACGACGATGGCGCTTTCTCCATCTTCATTGGCTCCAACGAACTCGAAGGAGGTTTTCTTTCGCTCGAGGAGATTGATGAGGTGGAGTATGGTTTGAATATTCCTGAACCTGAATATGGCAAGAGGAAGACGAAGAAGAAGAAGTCTGTACAGGATGAAGATGTGAAGAAACAGCAGCAAGATGGAGTTGGCGGTGCTAGTAGTGACGAGGTCGAAGCTGAGTTGGACGAGAGTGTGAAGGCTAAAGAGAAGAAAAAGAAGAAGACGAAAAAGAAGAAGACGAAAAAGAAGGATGCTACGGAAGACCAGAAAGTTGAGCAGCCAGATGCTGGTTTAGATGCGAATGTGAAAGACGGTAACGGTGAAGAGGACAATGATGAAACTGAATTTTATGCATGGAATGAGTTGAGGCTTCATCCTCTCCTAATGAAAGCAATATGCAAGCTTGGCTTCAAGGAACCAACACCAATACAGAAGGCTTGCATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCAGAGACAGGATCTGGTAAAACACTGGCGTTTGGTTTGCCCATTTTGCAACGCCTTTTGGAGGAGAGAGACAAGGATGCAAACATGGTTGAAGAACCCGAGAAGTGTTCTTCTAAAGGCGTTTTGAGGGCTCTTATTATTGCTCCAACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCTGTTGCTAAGTATATTAATGTTAGGGTGACCCCTATAGTTGGTGGCATTTTAGCAGAAAAACAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTTGTCGGAACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAAAAACATCTAGTTGAGTTACATTCACTCTCTTTCTTTGTGCTTGATGAGGCTGATCGGATGGTACAAAGTGGTCATTTTAAGGAGTTGCAGTCTATAATTGATATGCTTCCCATGTCCAATATCTCCACTGAAGATAATTCTCCAAATGTACAAAAGAGTTGTGTTACCGTTTCTAGTTACCAAAGAAAGAAAAGGCAAACACTTGTTTTTTCAGCAACTATTGCACTGTCTTCTGATTTTCGCAAGAAGCTAAAACATGGCTCAATTCAGAAAAAGCAATCATCAGCAGATGGATTGAATTCTATCGAAACTCTTTCTGAGCGTGCAGGAATGAGATCCAATGCTGCAATTATTGATCTTACTAATCCATCTATATTAGCAGCTAAGCTTGAGGAGTCATTTATTGAATGCAGAGAAGAAGATAAAGATGCATATTTGTATTATATTTTGACTGTCCATGGACAAGGTCGGACAATAGTTTTCTGCACGTCCATTGCAGCTTTACGTCATATTTCTTCCATGTTGCGTATTCTTGGAATCAATGTTTGGACTCTTCATGCCCAAATGCAGCAGCGTGCTCGTTTGAAGGCCTTTGATCGCTTTCGGGGAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCTAGGGGTCTCGATATTCCTGATGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCATCCGCTGAAGGTTGTAGCATTGCTTTAATATCAACGAGAGATACGTCAAAGTTTGCTTCACTTTGCAAATCATTTTCTAAGGATAACTTTCAGCGGTTTCCTTTAGAGAACTCTTACATGCCAGAGGTCCTAAAAAGATTGTCTCTTGCACGACAAATTGACAAGATAACAAGGAAGGATTCCCAGGTAAAGGCTGAAAAAAGCTGGTTTGATCGGAATGCTAGCTCAGTGGAATTAGTTACTGAAAATTATGACAGTGAAGAGGAGCAAGTGAACAAACAGAAGCAAATGAAGGTCAGCTCTAGACAATTGAAGAAATTGCAGGAGGAGCTCAATATGCTGATTTCTCGCCCATTACAATCAAAATCATTTTCACATCGGTATTTAGCAGGGGCTGGTGTCACACCCCTCATGCAGAAGCAATTGCAACAGTTAGCAAGGCAAAAACTAAGTGATCACCAGGGTTCTAGTCTAGGCAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGCATGGATGCACTTCAGGCACTTCGAAGTGCTGGTGAAGAGTGA 2283 0.4253 MEAATVATSSQRKLKRKRTLAKSDPELDRLNSLPWNSSLPQNDDDGAFSIFIGSNELEGGFLSLEEIDEVEYGLNIPEPEYGKRKTKKKKSVQDEDVKKQQQDGVGGASSDEVEAELDESVKAKEKKKKKTKKKKTKKKDATEDQKVEQPDAGLDANVKDGNGEEDNDETEFYAWNELRLHPLLMKAICKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRLLEERDKDANMVEEPEKCSSKGVLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISTEDNSPNVQKSCVTVSSYQRKKRQTLVFSATIALSSDFRKKLKHGSIQKKQSSADGLNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSMLRILGINVWTLHAQMQQRARLKAFDRFRGNENGILVATDVAARGLDIPDVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISTRDTSKFASLCKSFSKDNFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQVKAEKSWFDRNASSVELVTENYDSEEEQVNKQKQMKVSSRQLKKLQEELNMLISRPLQSKSFSHRYLAGAGVTPLMQKQLQQLARQKLSDHQGSSLGKKGKLVVIGQDCMDALQALRSAGEE* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01155 760 Pfam DEAD/DEAH box helicase 197 402 IPR011545 GO:0003676|GO:0005524
Phac10g01155 760 MobiDBLite consensus disorder prediction 1 49 - -
Phac10g01155 760 SMART ultradead3 192 429 IPR014001 -
Phac10g01155 760 CDD DEADc_DDX24 184 446 - -
Phac10g01155 760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 419 IPR014001 -
Phac10g01155 760 SMART helicmild6 496 577 IPR001650 -
Phac10g01155 760 Coils Coil 110 134 - -
Phac10g01155 760 Coils Coil 653 693 - -
Phac10g01155 760 Gene3D - 454 696 IPR027417 -
Phac10g01155 760 MobiDBLite consensus disorder prediction 30 44 - -
Phac10g01155 760 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 340 348 IPR000629 -
Phac10g01155 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 592 IPR027417 -
Phac10g01155 760 Gene3D - 119 415 IPR027417 -
Phac10g01155 760 CDD SF2_C_DEAD 457 586 - -
Phac10g01155 760 MobiDBLite consensus disorder prediction 78 101 - -
Phac10g01155 760 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 173 201 IPR014014 GO:0003724
Phac10g01155 760 Pfam Helicase conserved C-terminal domain 468 576 IPR001650 -
Phac10g01155 760 MobiDBLite consensus disorder prediction 72 167 - -
Phac10g01155 760 PANTHER RNA HELICASE 130 664 - -
Phac10g01155 760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 456 617 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01155 Phac-Chr10 32989072 33000075 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01155 174 617 Eukaryotic Initiation Factors Gene Family AT5G11200 27.991 1.46e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01155 K14805 - gmx:100806018 1253.81