Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01149 ATGGCTTTCCCTCCTTACCAACGATCCCACTTGCGTAGCAACACTTACCATGCCCTTGTTCACCTCCTCTCTCACCTTGCTAAGTACAACTCTTCACATGAAACTCCAACTCAACCCTTCAACATTCCTGATAATGGCAGTGGTAGAATGGATGGAGTAAACCAAGAAAAGGAGCCTAAGGGCTCTGAAGTTGTTGATTCCGATTTTTTGGATCCTATAAGCCAGAAGGATATACTGGAGGTTCAGGAGCTTATTAAGGGGGTTGGAGACAAGGATACGGATTTTACTTCCAACAATATGGTCCTAGATGATATAGAACATATGATGGCAATAGAGGACACGTCTAACCAAGTAATTGGTTTTGATAAGGAGCAGAAGCTAATAAATGAGTTTGAACTGGTTATGAAAGGAACTGAAGATCTTATTTGCGATAGTGATTTAATCCCCCTGAATGCTGGATTTGATGAGAAACATAATGATGGCTGTGAAGTTGGGTTAATGGATTCTCAAGTAGACATGGAAGAGGGAGAAATTTCTGGAGACTTGGGAAAGGATGACAGTTCATTTGATGTGTCTTCTGCAGATGCTTTGCGGCAGATGAAGGTAGATGAAGTTCAGAAGCCTGTAAATGTAACTAGAAATATGATATATCCTTCTATGATTAAGAATCAAGAAAAGGAAAAAGGTTGTGAGTCTACTTCGTCTATGTTAAATTCACTTCAAGATGGCAATAATAGTAGACAAGTGGAGCCTAGAACTGGTGGCAACAAAGGAATTGCATGCAGAGTTGAAGTAGCAATTTCTGAAGAAACTTTTGAATGTAAGAAGGAAGATAAAACGAAGTTGGTGAATGCCAGTAAAAGGAACAAGCGTGGTGGAAAGAAAGAAAAAAAAAAGATGGCATTTAGAATGAAGAGAGCAGCAAAAAACAGAGAACTAGGTATTAAAAGTTTGCAGTTGCAGAAGTATATGCAGAAACCAAAAGTTGTGTCACATTGTCGCCATTATCTTGTGGGAAGGTGCCATGAGGGTGACAAGTGTCAGTTCTCACACGATGTAGTGCCTCTAACAAAATCCAAGCCATGTAGTTACTTTGCTTTCCACTCTTGCATGAAAGGCGATGATTGCCCATTTGATCATGAGCTCTCAAAATATCCTTGTAACAATATTGTATCCCAAGGCTCTTGTAGAAGAGGTGAAACTTGCCTTTTTTCACACCAGGTAGCATCCAAAGAAGATATCCCTACTCCTTCAAACATATGCAGACCAGTGTTGTCTACTGTTCAGTCAGGAAATGCAAATTCCAGTACACCTCTTAGCAATAATCATGTCTCTTGTTCTGTCCAGCAAAACCGCTTAACTCGTTCTTCAGGAATTCATTCTCGCATCAATGTCGAACATAAGGTGACAAACACTGCACAAAAACAGACACCACCTAAAGGAATTAGTTTCATCAATCTTGCAAAATTAACACCCAGCTCTTCTGCACTTAAACAAGGCACAGTAACAATCAAGGAAAGTCCTTTACAAGCAGGGACCCACAAAGATCAAAGTGCATTTGAAAAAACTCAAACCAAGGTGGAGATTGCTGAGAAATTGCCATCTGTGACACCAAAAGGAGTAAACTTTCTTTCTTTTGGCAACGGCTCTGTCTGTGGCTTTAAAAGTCATATTCGTCCCAATGTGAGTACAGAAAATGGTTTCAAGTTGCCTCAGTTACTCAATTTTGGTTTGCCTGAGAAGGCTAATTCTTCTCTAAACAAGAACAACTACAACCAAGCTAGTGACAGGACAAAACAAAGTGTATCATTGACTGATATATTCTTAAATGAGATTTTAGGAAAAAATCAATCTGTGGCAGAAGGAATGAAATCAAAGTTTCCAGATAAAACCTCAGCTACACCAAGTCCTTTTGTTTCAATCCAGTCTTCTGAACACGTAAAATCTGGTTATCATAAGCATGCATCAAACTCAGGTCAAAAGGCATTCTTGTCAACTTTAGCATTTGCAGCAGAGCATGAATCTGACATTAAGATGAAATACCCTTCCGGTGATTCGTCTGCATGA 2067 0.3953 MAFPPYQRSHLRSNTYHALVHLLSHLAKYNSSHETPTQPFNIPDNGSGRMDGVNQEKEPKGSEVVDSDFLDPISQKDILEVQELIKGVGDKDTDFTSNNMVLDDIEHMMAIEDTSNQVIGFDKEQKLINEFELVMKGTEDLICDSDLIPLNAGFDEKHNDGCEVGLMDSQVDMEEGEISGDLGKDDSSFDVSSADALRQMKVDEVQKPVNVTRNMIYPSMIKNQEKEKGCESTSSMLNSLQDGNNSRQVEPRTGGNKGIACRVEVAISEETFECKKEDKTKLVNASKRNKRGGKKEKKKMAFRMKRAAKNRELGIKSLQLQKYMQKPKVVSHCRHYLVGRCHEGDKCQFSHDVVPLTKSKPCSYFAFHSCMKGDDCPFDHELSKYPCNNIVSQGSCRRGETCLFSHQVASKEDIPTPSNICRPVLSTVQSGNANSSTPLSNNHVSCSVQQNRLTRSSGIHSRINVEHKVTNTAQKQTPPKGISFINLAKLTPSSSALKQGTVTIKESPLQAGTHKDQSAFEKTQTKVEIAEKLPSVTPKGVNFLSFGNGSVCGFKSHIRPNVSTENGFKLPQLLNFGLPEKANSSLNKNNYNQASDRTKQSVSLTDIFLNEILGKNQSVAEGMKSKFPDKTSATPSPFVSIQSSEHVKSGYHKHASNSGQKAFLSTLAFAAEHESDIKMKYPSGDSSA* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01149 688 Pfam CCCH-type zinc finger 332 352 IPR041367 -
Phac10g01149 688 ProSiteProfiles Zinc finger C3H1-type profile. 356 383 IPR000571 GO:0046872
Phac10g01149 688 ProSiteProfiles Zinc finger C3H1-type profile. 327 354 IPR000571 GO:0046872
Phac10g01149 688 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 160 684 IPR045124 GO:0003723|GO:0045892
Phac10g01149 688 Gene3D - 318 384 - -
Phac10g01149 688 ProSiteProfiles Zinc finger C3H1-type profile. 386 409 IPR000571 GO:0046872
Phac10g01149 688 MobiDBLite consensus disorder prediction 30 44 - -
Phac10g01149 688 SMART c3hfinal6 356 382 IPR000571 GO:0046872
Phac10g01149 688 SMART c3hfinal6 384 408 IPR000571 GO:0046872
Phac10g01149 688 SMART c3hfinal6 326 353 IPR000571 GO:0046872
Phac10g01149 688 MobiDBLite consensus disorder prediction 51 65 - -
Phac10g01149 688 MobiDBLite consensus disorder prediction 234 254 - -
Phac10g01149 688 MobiDBLite consensus disorder prediction 234 252 - -
Phac10g01149 688 MobiDBLite consensus disorder prediction 30 65 - -
Phac10g01149 688 SUPERFAMILY CCCH zinc finger 328 352 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01149 Phac-Chr10 32930644 32938124 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac10g01149 zf-CCCH_4 1.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01149 - - vun:114165961 1037.71