Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01147 ATGGCGGAAGAGAATGAAGAAGTAAAAACATTTAAGGATTTGGGCTTGGCTGAATCACTGGTTGAAGCTTGTGAAAATTTGGGTTGGAAAACTCCACTGAAGATACAGGCAGAGGCTATTCCTCTTGCATTGGGAGATGTGATAGGGCTTGCCCAAACTGGTTCTGGGAAGACAGGAGCTTTTGCTCTTCCTATATTGCACGCCCTCTTAGATGCTCCTCGCCCGAAAGATTTCTTTGCCTGCGTGCTGTCTCCCACTAGAGAGCTTGCTATTCAAATTGCCGAGCAGTTTGAAGCTCTAGGTTCAGAAATTGGTGTGAAGTGTGCTGTGCTTGTCGGAGGAATTGACATGGTACAACAATCCATCAAGATAGCAAAGCAACCTCATATTATTGTTGGAACCCCTGGACGAGTTTTAGATCACCTAAAGCACACAAAAGGATTTTCTTTTAGTAGACTAAAATACTTGGTCTTAGATGAGGCGGATAGGTTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGATTTTACAAATGATTCCTCGTGAGCGGAGAACATTTCTATTTTCTGCTACAATGACTAAGAAGGTGCAGAAGCTGCAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCATCGTCTAAATATTCCACTGTTGACACATTGAAGCAGCAGTATCGCTTCTTGCCTGCCAAACACAAGGATTGCTACCTTGTATATATCCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACACGTACCTGTGATGCAACTCGACTTCTAGCATTGATCCTTAGGAATCTTGGTTTAAAAGCCATACCTATTAATGGTCATATGAGCCAGTCAAAGAGACTTGGAGCTTTGAACAAGTTCAAATCTGGGGAGTGCAATATTCTCCTTTGTACTGATGTAGCTAGCAGGGGACTGGATATTCCCACTGTAGATATGGTGATTAACTATGATATTCCCACAAATTCCAAAGATTATATACATCGCGTGGGAAGAACTGCTCGTGCAGGGCGCTCTGGAGTTGCCATTTCCCTTGTAAATCAGTATGAACTGGAGTGGTACATTCAAATAGAGAAGCTTATAGGAAAAAAGCTACCAGAGTATCCTTCACAAGAAGAGGAAGTTCTCCTTTTGGAAGAACGTGTTAGTGAAGCCAAAAGATTAGCCACCACGAAAATGAAGGAGACTGGAGGGAAGAAGAAACGGAGGGGTGAAGAAGATAATGATGGGGAAGATATCGACAAGTACTTGGGTCTGAAGGATGGAAAATCATCCAAGAAGTTCAGAAGAAGATGA 1314 0.4239 MAEENEEVKTFKDLGLAESLVEACENLGWKTPLKIQAEAIPLALGDVIGLAQTGSGKTGAFALPILHALLDAPRPKDFFACVLSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKHTKGFSFSRLKYLVLDEADRLLNEDFEESLNEILQMIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEASSKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGECNILLCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPSQEEEVLLLEERVSEAKRLATTKMKETGGKKKRRGEEDNDGEDIDKYLGLKDGKSSKKFRRR* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01147 437 Pfam DEAD/DEAH box helicase 34 200 IPR011545 GO:0003676|GO:0005524
Phac10g01147 437 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 38 211 IPR014001 -
Phac10g01147 437 Pfam Helicase conserved C-terminal domain 238 343 IPR001650 -
Phac10g01147 437 MobiDBLite consensus disorder prediction 394 424 - -
Phac10g01147 437 SMART ultradead3 28 226 IPR014001 -
Phac10g01147 437 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 238 382 IPR001650 -
Phac10g01147 437 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 157 165 IPR000629 -
Phac10g01147 437 CDD DEADc_DDX47 10 212 IPR044765 GO:0005524
Phac10g01147 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 364 IPR027417 -
Phac10g01147 437 Gene3D - 217 389 IPR027417 -
Phac10g01147 437 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Phac10g01147 437 Gene3D - 1 216 IPR027417 -
Phac10g01147 437 PANTHER RNA HELICASE 5 399 - -
Phac10g01147 437 SMART helicmild6 262 343 IPR001650 -
Phac10g01147 437 CDD SF2_C_DEAD 223 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01147 Phac-Chr10 32912917 32918882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01147 6 375 Eukaryotic Initiation Factors Gene Family AT3G19760 31.117 1.20e-60 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01147 K14777 - gmx:100775796 802.742