Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01111 ATGGAGGTAGAAACTATGATCTTTCAAAATTCATCACCAACTACATGTCAGTATTGGATAAACGGTAATTGTCCAAGGGGTGATGAATGTCCAAATTTACATTGGTGGGTTGACACCAACAACAACTCTAATAATGCAAAGGACAATCCAAATTTCGCAAGATTAGTTTGTTGGATACCACCTCCCAAAGGATTTATTAAGATTAACTGTGATGGAGCTTTCACCCTTGATGGAAGAAAGGCTAGTGCAGGAGGTGTTGTTAGAGATTGTGAGGGTGAATTTCTTTTTGGCTTCTCTACTGCCTTAAGAGTTGGTTCAGCAGTAGAGGCTGAATTATTCGCAATCAAAATTGGAATGGAACTAGCCATATCAANNNNNNNNNNGAGTTTCAGAGACGAGATATTCGATTAA 411 0.3771 MEVETMIFQNSSPTTCQYWINGNCPRGDECPNLHWWVDTNNNSNNAKDNPNFARLVCWIPPPKGFIKINCDGAFTLDGRKASAGGVVRDCEGEFLFGFSTALRVGSAVEAELFAIKIGMELAISXXXXSFRDEIFD* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01111 136 ProSiteProfiles Zinc finger C3H1-type profile. 10 37 IPR000571 GO:0046872
Phac10g01111 136 Pfam Zinc finger domain 16 34 - -
Phac10g01111 136 Gene3D - 5 68 - -
Phac10g01111 136 SMART c3hfinal6 10 36 IPR000571 GO:0046872
Phac10g01111 136 SUPERFAMILY Ribonuclease H-like 65 124 IPR012337 -
Phac10g01111 136 PANTHER OS05G0353850 PROTEIN 36 124 - -
Phac10g01111 136 Pfam Reverse transcriptase-like 69 124 IPR002156 GO:0003676|GO:0004523
Phac10g01111 136 Gene3D - 69 132 IPR036397 GO:0003676
Phac10g01111 136 SUPERFAMILY CCCH zinc finger 13 34 IPR036855 GO:0046872
Phac10g01111 136 CDD RNase_H_like 68 124 IPR044730 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01111 Phac-Chr10 32425723 32426527 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac10g01111 RVT_3 1.9e-09 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01111 - - pvu:PHAVU_006G058500g 122.094