Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01110 ATGGAGGTAGAAACTATGATCTTTCAAAATTCATCACCAACTACATGTCAGTATTGGATAAACGGTAATTGTCCAAGGGGTGATGAATGTCCGAATTTACATTGGTGGGTTGACACCAACAAACACTCTAATAATGCCAAGGACAATCCAAATTGTGCAAGATTAGTTTGTTGGATACCACCTCCCAAAGGATTTATTAAGATTAACTGTGATGGAGCTTTCACCCTTGATGGAAGAAAGGCTAGTGCAGGAGGTGTTGTTAGAGATTGTGAGGGTGAATTTCTTTTTGGCTTCTCTACTGCCTTAAGAGTTGGTTCAGCAGCAGAGGCTGAATTATTCGCAATCAAAATTGGAATGGAACTAGCCATATCATTGGGATATAAAAATTTGATCATTGAGAGTGATTCTCAAACAGCTATCCAACTTATCAATTGGGGACTCATCAAACAAACTCATCCTTTCTATATTGTTGTGTCTTCCATAATTCAGATGGGTGCCAAAGTTGATTACATCTCTTGGAACCATGTGTTTAGAGAGACTAACTCGGTAGCAGATGGTCTTGCAAAATATGGATTATCCTTATCTTTGAACTCACCTGTTACTTTTTTTGAGTTTGCTCCCAATTTTCTCATTTTTAATTTATGTGTTGATCAAAGTGGAAAGATGTACTCTCGCTAA 678 0.3761 MEVETMIFQNSSPTTCQYWINGNCPRGDECPNLHWWVDTNKHSNNAKDNPNCARLVCWIPPPKGFIKINCDGAFTLDGRKASAGGVVRDCEGEFLFGFSTALRVGSAAEAELFAIKIGMELAISLGYKNLIIESDSQTAIQLINWGLIKQTHPFYIVVSSIIQMGAKVDYISWNHVFRETNSVADGLAKYGLSLSLNSPVTFFEFAPNFLIFNLCVDQSGKMYSR* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01110 225 ProSiteProfiles Zinc finger C3H1-type profile. 10 37 IPR000571 GO:0046872
Phac10g01110 225 Pfam Zinc finger domain 16 34 - -
Phac10g01110 225 Gene3D - 5 67 - -
Phac10g01110 225 SUPERFAMILY CCCH zinc finger 13 34 IPR036855 GO:0046872
Phac10g01110 225 Pfam Reverse transcriptase-like 69 190 IPR002156 GO:0003676|GO:0004523
Phac10g01110 225 SMART c3hfinal6 10 36 IPR000571 GO:0046872
Phac10g01110 225 CDD RNase_H_like 68 189 IPR044730 -
Phac10g01110 225 SUPERFAMILY Ribonuclease H-like 65 198 IPR012337 -
Phac10g01110 225 ProSiteProfiles RNase H type-1 domain profile. 62 193 IPR002156 GO:0003676|GO:0004523
Phac10g01110 225 PANTHER OS05G0353850 PROTEIN 42 208 - -
Phac10g01110 225 Gene3D - 68 193 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01110 Phac-Chr10 32416758 32417830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01110 58 192 Glycoside Hydrolase AT2G33160 29.412 2.58e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac10g01110 RVT_3 1.2e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01110 - - pvu:PHAVU_006G058500g 200.29