Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01095 ATGAGGCCTGTTTTCTGTGGAAACCTGGATTTCGACGCGCGTCAATCTGATGTGGAGAGGCTCTTTAGAAGATATGGGAAAGTCGATAGAGTCGACATGAAATCTGGGTTTGCTTTCGTTTACATGGAAGATGAAAGAGATGCCGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGCACGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGAGACAGTAGAAGATCGGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAGGCCATCCAAAACTTTGTTTGTTATTAATTTTGATCCAGTTCACGCTAGGACAAGGGATCTGGAGAGACATTTTGATTCTTATGGGAAAATATTAAATATAAGGATCAGGAGGAATTTTGCTTTTATTCAGTATGAATCACAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACTGTGGAGTATGCCATAAGAGATGATGATGACAGAGATAGAAGGAACGGATACAGTCCTGAAAGAAGAGGTCATGACTCTCCTGATGGTAGATATGGTCGTGGTAGATCGCCTAGATCGCCTAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCGAATCCATCTTCCAGACCAGAAACAAGAGGAAGCCCCAAGTATGAACGACCTGAAAGTCCGATAAATGGGAGATATGATAGCCGGTCTCCACCACCCAGAGATAGGTCACGTTCTTGA 768 0.4401 MRPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKARRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVHARTRDLERHFDSYGKILNIRIRRNFAFIQYESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPERRGHDSPDGRYGRGRSPRSPSPYRRGRGSPDYGHGSNPSSRPETRGSPKYERPESPINGRYDSRSPPPRDRSRS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01095 255 MobiDBLite consensus disorder prediction 170 255 - -
Phac10g01095 255 SMART rrm1_1 97 163 IPR000504 GO:0003723
Phac10g01095 255 SMART rrm1_1 3 70 IPR000504 GO:0003723
Phac10g01095 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Phac10g01095 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Phac10g01095 255 MobiDBLite consensus disorder prediction 226 255 - -
Phac10g01095 255 Gene3D - 1 86 IPR012677 -
Phac10g01095 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Phac10g01095 255 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Phac10g01095 255 MobiDBLite consensus disorder prediction 72 94 - -
Phac10g01095 255 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 107 250 - -
Phac10g01095 255 SUPERFAMILY RNA-binding domain, RBD 2 169 IPR035979 GO:0003676
Phac10g01095 255 MobiDBLite consensus disorder prediction 170 193 - -
Phac10g01095 255 Gene3D - 87 236 IPR012677 -
Phac10g01095 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Phac10g01095 255 MobiDBLite consensus disorder prediction 72 86 - -
Phac10g01095 255 FunFam serine/arginine-rich splicing factor RS41 isoform X2 88 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01095 Phac-Chr10 32303399 32306835 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01095 4 162 Eukaryotic Initiation Factors Gene Family AT4G34110 24.138 7.00e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01095 K12893 - gmx:100797778 398.667