Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac10g01094 | ATGACTTTTGCTCAGTGTTCAATTTCCAACATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGGTTTGCTTTCGTTTACATGGAAGATGAAAGAGATGCCGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGCACGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGAGACAGTAGAAGATCGGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAGGCCATCCAAAACTTTGTTTGTTATTAATTTTGATCCAGTTCACGCTAGGACAAGGGATCTGGAGAGACATTTTGATTCTTATGGGAAAATATTAAATATAAGGATCAGGAGGAATTTTGCTTTTATTCAGTATGAATCACAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACTGTGGAGTATGCCATAAGAGATGATGATGACAGAGATAGAAGGAACGGATACAGTCCTGAAAGAAGAGGTCATGACTCTCCTGATGGTAGATATGGTCGTGGTAGATCGCCTAGATCGCCTAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCGAATCCATCTTCCAGACCAGAAACAAGAGGAAGCCCCAAGTATGAACGACCTGAAAGTCCGATAAATGGGAGATATGATAGCCGGTCTCCACCACCCAGAGATAGGTCACGTTCTTGA | 735 | 0.4313 | MTFAQCSISNMFQHRNHDDFATVAGFAFVYMEDERDAEYAIRRLDRTEFGRKARRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVHARTRDLERHFDSYGKILNIRIRRNFAFIQYESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPERRGHDSPDGRYGRGRSPRSPSPYRRGRGSPDYGHGSNPSSRPETRGSPKYERPESPINGRYDSRSPPPRDRSRS* | 245 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac10g01094 | 244 | MobiDBLite | consensus disorder prediction | 215 | 244 | - | - | |
Phac10g01094 | 244 | MobiDBLite | consensus disorder prediction | 61 | 75 | - | - | |
Phac10g01094 | 244 | SMART | rrm1_1 | 86 | 152 | IPR000504 | GO:0003723 | |
Phac10g01094 | 244 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 1 | 63 | IPR000504 | GO:0003723 | |
Phac10g01094 | 244 | FunFam | serine/arginine-rich splicing factor RS41 isoform X2 | 77 | 211 | - | - | |
Phac10g01094 | 244 | SUPERFAMILY | RNA-binding domain, RBD | 24 | 159 | IPR035979 | GO:0003676 | |
Phac10g01094 | 244 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 87 | 149 | IPR000504 | GO:0003723 | |
Phac10g01094 | 244 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 24 | 52 | IPR000504 | GO:0003723 | |
Phac10g01094 | 244 | Gene3D | - | 80 | 167 | IPR012677 | - | |
Phac10g01094 | 244 | MobiDBLite | consensus disorder prediction | 159 | 182 | - | - | |
Phac10g01094 | 244 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 22 | 100 | - | - | |
Phac10g01094 | 244 | Gene3D | - | 11 | 79 | IPR012677 | - | |
Phac10g01094 | 244 | MobiDBLite | consensus disorder prediction | 61 | 83 | - | - | |
Phac10g01094 | 244 | MobiDBLite | consensus disorder prediction | 159 | 244 | - | - | |
Phac10g01094 | 244 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 85 | 156 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac10g01094 | Phac-Chr10 | 32303399 | 32306835 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac10g01094 | 25 | 177 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 25.767 | 1.48e-07 | 50.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac10g01094 | K12893 | - | gmx:100797778 | 329.331 |