Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01094 ATGACTTTTGCTCAGTGTTCAATTTCCAACATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGGTTTGCTTTCGTTTACATGGAAGATGAAAGAGATGCCGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGCACGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGAGACAGTAGAAGATCGGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAGGCCATCCAAAACTTTGTTTGTTATTAATTTTGATCCAGTTCACGCTAGGACAAGGGATCTGGAGAGACATTTTGATTCTTATGGGAAAATATTAAATATAAGGATCAGGAGGAATTTTGCTTTTATTCAGTATGAATCACAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACTGTGGAGTATGCCATAAGAGATGATGATGACAGAGATAGAAGGAACGGATACAGTCCTGAAAGAAGAGGTCATGACTCTCCTGATGGTAGATATGGTCGTGGTAGATCGCCTAGATCGCCTAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCGAATCCATCTTCCAGACCAGAAACAAGAGGAAGCCCCAAGTATGAACGACCTGAAAGTCCGATAAATGGGAGATATGATAGCCGGTCTCCACCACCCAGAGATAGGTCACGTTCTTGA 735 0.4313 MTFAQCSISNMFQHRNHDDFATVAGFAFVYMEDERDAEYAIRRLDRTEFGRKARRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVHARTRDLERHFDSYGKILNIRIRRNFAFIQYESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPERRGHDSPDGRYGRGRSPRSPSPYRRGRGSPDYGHGSNPSSRPETRGSPKYERPESPINGRYDSRSPPPRDRSRS* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01094 244 MobiDBLite consensus disorder prediction 215 244 - -
Phac10g01094 244 MobiDBLite consensus disorder prediction 61 75 - -
Phac10g01094 244 SMART rrm1_1 86 152 IPR000504 GO:0003723
Phac10g01094 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 63 IPR000504 GO:0003723
Phac10g01094 244 FunFam serine/arginine-rich splicing factor RS41 isoform X2 77 211 - -
Phac10g01094 244 SUPERFAMILY RNA-binding domain, RBD 24 159 IPR035979 GO:0003676
Phac10g01094 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 149 IPR000504 GO:0003723
Phac10g01094 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 52 IPR000504 GO:0003723
Phac10g01094 244 Gene3D - 80 167 IPR012677 -
Phac10g01094 244 MobiDBLite consensus disorder prediction 159 182 - -
Phac10g01094 244 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 22 100 - -
Phac10g01094 244 Gene3D - 11 79 IPR012677 -
Phac10g01094 244 MobiDBLite consensus disorder prediction 61 83 - -
Phac10g01094 244 MobiDBLite consensus disorder prediction 159 244 - -
Phac10g01094 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 156 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01094 Phac-Chr10 32303399 32306835 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01094 25 177 Eukaryotic Initiation Factors Gene Family AT1G49760 25.767 1.48e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01094 K12893 - gmx:100797778 329.331