Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01093 ATGATTACTTGCTCCAAAGTAAGGGAAAGAAAGCCTCGTGGGGCATCTTTAGCTTTGGTGACACCAATTCAATTTTACTTCACCACCACTCTGTCCAAATTTGAAATCATGGTGGAAGCTAGTAAAGATGCAGTAGCAGTTGATGCCTGTTCAAGAGAACACTGGTTGTTGCATGCACAGGAACTTGTTCCTGTGGCTCTTGCTAAGGCAAGAGAGGTTAAGGTGTTCCCTGGTAGGTGGAAGATGATCATTTCAAAATTGGAGCAGATTCCTTCCTGTTTATCGGATTTGTCTAGCCACCCTTGTTTCTCCAAGAATGTTCTCTGCAAGGAGCAATTGCAGGCTGTGTCAAAGACACTTGAAGAAGCCACGGAATTAGCTGAGTTGTGTGTGAAGGAGAAGTATGAGGGTAAGCTTCGGATGCAGAGTGATCTTGATGCATTAACAGGGAAACTGGATTTGAATTTGAAGGATTGTGGTCTCTTGATCAAGACCGGTGTGCTTGGTGAAGCTACTTTGCCATTAACCGTGTTAGGTTTTATGGCAGAATCAGATATTGCAAGACACAACAATATAAGAGAACTACTAGCGCGGCTTCAGATTGGTCACATGGAAGCAAAGCACAAAGCCTTAGACAGACTGTATGATGTTATGAAAGAGGATGAGAAGAATGTTTTGGCTGTTCTTGGCAGGAGGAATGTTGCTGCTTTGGTTCAATTGCTCACAGAAACCTCTTCAAGGATAAGAGAGAAGACAGTTACTGTTATATGCTCTCTTGTGGAATCGGGGAGCTGTGAAAAGTGGCTAGTTTCTGAAGGAGTTCTGCCACCTCTTATTAGACTTGTTGAATCTGGTAGTGCTGCCAGTAAAGAGAAGGCTATAGTATCTCTTCAGAGATTGTCAATGTCAGCAGAAACAACTCGTGCAATTGTGGGACATGGTGGTGTTCGGCCATTGATTGAGCTTTGTCAAAGTGGCGATTCTGTGTCACAGGCTGCTGCTGCCTGTACTTTGACAAATATATCAGCTGTTCCTGAGGTGAGACAGGCTTTGGCTGAAGAAGGTATTGTAAGCGTTATGATCAATCTTCTTAATTGTGGAATTTTATTAGGTTCGAAAGAGTATGCAGCTGAGTGCTTGCAGAATCTGACTTCAAGCAATGAGCATTTGAGAAAGTCTGTTATATCAGAAGGTGGTGTTAGAAGTCTTCTGACCTATCTTGATGGTCCACTTCCCCAAGAATCTGCAGTTGGAGCATTGAGGAATCTGGTTGGATCAGTTTCTGAGGAAACTTTGGTTTCTCTTGGTTTGCTTCCCCGTTTGGTTCATGTTCTCAAGTCTGGATCTTTGGGTGCTCAACAAGCTGCCACTTGTGTGATTTGCCGAGTTTGCAGCTCAATGGAGATGAAGAAAATGGTGGGTGAAGCTGGCTGCATCCCTCTTCTTATAAAGATGCTTGAAGCTAAAGCAAATAGTGCTAGAGAGGTTGCTGCTCAAGCAATTTCAAGCCTAATGGTTCTGTCCCAGAATCGGAGAGAGGTTAAGAAAGATGATAAAAGTGTGCCAAATCTTGTCCAGTTGCTTGATCCAAGCCCTCAGAACAGTGCCAAAAAGTATGCAGTTTCATGCCTTGGATCACTTTCCCCATGCAAGAAGTGTAAGAAACTAATGATTTCGTATGGAGCAATCGGGTATCTGAAGAAGCTTACAGAGATGGAGATTCCAGGAGCTAAAAAGCTACTTGAGAGGTTGGAAAGAGGGAAATTGAGAAGCTTGTTCAGCAGAAAGTAG 1791 0.4338 MITCSKVRERKPRGASLALVTPIQFYFTTTLSKFEIMVEASKDAVAVDACSREHWLLHAQELVPVALAKAREVKVFPGRWKMIISKLEQIPSCLSDLSSHPCFSKNVLCKEQLQAVSKTLEEATELAELCVKEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGVLGEATLPLTVLGFMAESDIARHNNIRELLARLQIGHMEAKHKALDRLYDVMKEDEKNVLAVLGRRNVAALVQLLTETSSRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAASKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCQSGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLNCGILLGSKEYAAECLQNLTSSNEHLRKSVISEGGVRSLLTYLDGPLPQESAVGALRNLVGSVSEETLVSLGLLPRLVHVLKSGSLGAQQAATCVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKANSAREVAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLDPSPQNSAKKYAVSCLGSLSPCKKCKKLMISYGAIGYLKKLTEMEIPGAKKLLERLERGKLRSLFSRK* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01093 596 Gene3D - 188 371 IPR011989 -
Phac10g01093 596 SMART arm_5 344 385 IPR000225 GO:0005515
Phac10g01093 596 SMART arm_5 387 425 IPR000225 GO:0005515
Phac10g01093 596 SMART arm_5 221 261 IPR000225 GO:0005515
Phac10g01093 596 SMART arm_5 507 549 IPR000225 GO:0005515
Phac10g01093 596 SMART arm_5 426 465 IPR000225 GO:0005515
Phac10g01093 596 SMART arm_5 466 506 IPR000225 GO:0005515
Phac10g01093 596 SMART arm_5 303 343 IPR000225 GO:0005515
Phac10g01093 596 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 273 315 IPR000225 GO:0005515
Phac10g01093 596 Pfam Armadillo/beta-catenin-like repeat 305 343 IPR000225 GO:0005515
Phac10g01093 596 Pfam Armadillo/beta-catenin-like repeat 468 504 IPR000225 GO:0005515
Phac10g01093 596 Gene3D - 372 467 IPR011989 -
Phac10g01093 596 Gene3D - 468 583 IPR011989 -
Phac10g01093 596 SUPERFAMILY ARM repeat 190 575 IPR016024 -
Phac10g01093 596 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 52 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01093 Phac-Chr10 32295198 32298083 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01093 242 515 U-box Gene Family AT3G54790 26.882 6.99e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01093 - - var:108346326 1060.44