Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01019 ATGAATAAGGAAAGCTGGTCTGTCTCTGTGCTTTTTCTCTTGGCTAAAGATAGGTCAAATCCAACTCTTCAACCTCAACTTTTTCCTTCACTTACCGAGAGAGACCTTCTTGTGTTCGAACTTGCTTTTCTTGCTGCTTTCTGTGTCTTCAAGGCCAACTTGGAGGGCTCATATTTGCTGCAAATCTTTCCATTTCCCTATCATCGCAAGAAAGTAGAAGAGATGGTGAGAGGAAAGACTCAAATGAAGCGTATAGAGAACGCCACAAGCCGGCAAGTAACTTTCTCGAAGAGGCGAAATGGGTTGCTGAAGAAGGCTTTTGAGCTATCAGTTCTGTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTCCAAGAGGGAAGCTCTATGAATTTGCTAGCTCCAGGTACCATTATTTCTCCTCCTTCAACTTTCCCTTTTCTTCTTCTTAA 450 0.4311 MNKESWSVSVLFLLAKDRSNPTLQPQLFPSLTERDLLVFELAFLAAFCVFKANLEGSYLLQIFPFPYHRKKVEEMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSRYHYFSSFNFPFSSS* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01019 149 PRINTS MADS domain signature 77 97 IPR002100 GO:0003677|GO:0046983
Phac10g01019 149 PRINTS MADS domain signature 97 112 IPR002100 GO:0003677|GO:0046983
Phac10g01019 149 PRINTS MADS domain signature 112 133 IPR002100 GO:0003677|GO:0046983
Phac10g01019 149 Gene3D - 87 142 IPR036879 GO:0003677|GO:0046983
Phac10g01019 149 PANTHER SERUM RESPONSE FACTOR HOMOLOG 77 135 - -
Phac10g01019 149 CDD MADS_MEF2_like 77 134 IPR033896 GO:0000977|GO:0045944
Phac10g01019 149 SMART madsneu2 75 134 IPR002100 GO:0003677|GO:0046983
Phac10g01019 149 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 84 131 IPR002100 GO:0003677|GO:0046983
Phac10g01019 149 SUPERFAMILY SRF-like 75 137 IPR036879 GO:0003677|GO:0046983
Phac10g01019 149 ProSiteProfiles MADS-box domain profile. 75 135 IPR002100 GO:0003677|GO:0046983
Phac10g01019 149 ProSitePatterns MADS-box domain signature. 77 131 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01019 Phac-Chr10 31314755 31316086 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01019 75 134 MADS-box Gene Family AT2G45660 96.667 3.77e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac10g01019 SRF-TF 4.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01019 - - tcc:18614250 119.012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g01019 10 31314755 31316086 Phac10g01019 10 31314755 31316086 ECH