Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00962 ATGGATCCTGTAGCAGCACAAGGACGTCCTCTCCCTCCCCCTTTTCTCACTAGAGATCTTCACTTACACCCTCACCACCAATTCCAACCCCACCACAACCACCAAAACACGGAGGATGAAGCTGCCAATGGCCGCGGCCAGAAGCGAGATCGCGACGAGAACACCGGCAGTGGAGGCGGGGCCACCACACCCCCCCACGCCGGCGGAGATGGCCAGGAACCCGGGTCAGGAGATGGAGGAGGAGGAGGAAGTGAAATGGGGAGAAGGCCGAGAGGAAGACCCGCAGGGTCCAAGAACAAGCCCAAACCACCCATTATCATCACAAGGGACAGTGCCAACGCTCTCCGATCCCATGTTATGGAAATCGCCAACGGCTGCGACATCATGGAGAGCGTCACGGCCTTCGCAAGGCGGCGACAGCGTGGTGTTTGTGTGCTCAGCGGCAGCGGCACCGTCACCAACGTGACCCTCCGGCAGCCAGCTTCTCCGGGTGCCGTTGTGACCCTTCATGGAAGGTTCGAGATTCTATCCCTGTCCGGTTCATTTCTGCCGCCGCCGGCTCCGCCAGCCGCGTCAGGACTAGCCATTTACCTTGCTGGCGGACAGGGACAGGTAGTAGGTGGAAGCGTGGTGGGACCCCTGCTGGCTTCAGGTCCTGTTGTTATCATGGCTGCTTCATTTGGTAATGCTGCTTATGAGAGACTACCCTTAGAGGATGAGGAAACTCCGGTACCAGTTCCGGGCACCGGCGGATTAGGGTCGCCGGGAATTGCAGGGACACAGCAGCAATCGCAATCTCAGCCGCAACAGCCACAACAGCTTGTGGGAGATCCCAACACTTCTTCTCTCTTCCATGGAGTTCCTCAGAATCTTCTCAATTCGGTTCAATTACCGGCTGAGGGTTATTGGGGTGGCACTGCACGCCCCTCTTTTTAA 936 0.5812 MDPVAAQGRPLPPPFLTRDLHLHPHHQFQPHHNHQNTEDEAANGRGQKRDRDENTGSGGGATTPPHAGGDGQEPGSGDGGGGGSEMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMESVTAFARRRQRGVCVLSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEETPVPVPGTGGLGSPGIAGTQQQSQSQPQQPQQLVGDPNTSSLFHGVPQNLLNSVQLPAEGYWGGTARPSF* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00962 311 MobiDBLite consensus disorder prediction 19 55 - -
Phac10g00962 311 Pfam Plants and Prokaryotes Conserved (PCC) domain 116 228 IPR005175 -
Phac10g00962 311 PIRSF ESCAROLA 16 311 IPR014476 GO:0003680
Phac10g00962 311 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 278 IPR014476 GO:0003680
Phac10g00962 311 MobiDBLite consensus disorder prediction 240 287 - -
Phac10g00962 311 MobiDBLite consensus disorder prediction 1 106 - -
Phac10g00962 311 SUPERFAMILY AF0104/ALDC/Ptd012-like 112 247 - -
Phac10g00962 311 CDD DUF296 116 183 IPR005175 -
Phac10g00962 311 ProSiteProfiles PPC domain profile profile. 112 250 IPR005175 -
Phac10g00962 311 MobiDBLite consensus disorder prediction 255 287 - -
Phac10g00962 311 FunFam AT-hook motif nuclear-localized protein 115 242 - -
Phac10g00962 311 Gene3D - 115 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00962 Phac-Chr10 29920943 29923686 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00962 1 311 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 64.848 3.69e-91 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00962 - - gmx:100816243 455.677