Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00836 ATGGGGAGAGGAATGATTGTGATATGGAGGATTGACAATTCGACGAGTAGGCAAGCCACGTTCTCGAAGCGAAGGAACAGTTTGTTGAAGAAGGCGAAGCAACTTGCGATCTTGTGCGATGCTGAAGTCAGAGTTATAATTTTCTCGAGCACCGGAAAACTCTACGATTTCGCCAGCTCCAGCTATTCGTAA 192 0.4635 MGRGMIVIWRIDNSTSRQATFSKRRNSLLKKAKQLAILCDAEVRVIIFSSTGKLYDFASSSYS* 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00836 63 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac10g00836 63 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac10g00836 63 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac10g00836 63 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac10g00836 63 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac10g00836 63 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac10g00836 63 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Phac10g00836 63 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Phac10g00836 63 Gene3D - 13 63 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00836 Phac-Chr10 24133183 24133493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00836 1 61 MADS-box Gene Family AT2G14210 83.607 2.40e-28 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac10g00836 SRF-TF 2.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00836 K09264 - gmx:100778970 104.375