Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00825 ATGCAACCAAGAACAAGTGTTGGAGATGGCAGTCGGGTATGTACCTCAAGTATACCTAGTAATTCTTGCGGTGGGTCAGAACAAGATGACCTAGACTCATTTCGTGATGTGTACATATGGGGTGAGGTTCTGTCAAATGGAGTTTCACCTGATGGGATTGCAACTCAAGTTCCTTCTCATATAGATGTGTTGATTCCTAAGCCTTTAGAGTCAAATGTTATTCTAGATGTTTGCCACATTGCAACTGGTGCACACCACATCGCTGTAGTAACTAAGCAAGGACATGTTTTTACATGGGGAAAAGAATCAGGGGGAAGACTTGGTCATGGAATTGATAACGATTTTGTCTCCCCCCGTGAAGTTAAGTTTCTTGAAGATACTGATTTTGACTTTGTTGCATGTGGAGAGTATCACACAGGAGTTATATCTAAATGCTATGAACTTTATACATGGGGTGATGGAGCACATAATGTTGGACTTCTTGGACATGGTTCCGAGGCTAGCCATTGGATGCCAAAAATGGTCATTGGCCCTTTAGAAGGAGTTGAAGTTGTGTCTGTTGCATGTGGCACATGGCATTCGGCATTGGCTACCTCAGATGGAAAACTTTTTACCTTTGGTGATGGGGCATTCGGTGTCTTGGGCCATGGAGATCAAGAGAGTGTGTGGTATCCAAAAGAAGTACAACTTTTGAGTGGACTAAAGACTGTTAAGGTTGCATGTGGAGTTTGGCACACAGCAGCTATTATAGAGGTTGAATTTCAATCTGGTTCAAATGCTTCATCTGGGAAGCTTTTCACCTGGGGTGATGGTGATAAACATTGTTTGGGGCATGGAAACAAAGAAACATACCTTCAACCTACCCGTGTTGCTCCACTTATGGAATATAATTTCCAGCAAGTTGCATGTGGGCACACAATGACTATTGCTCTCACTACATCTGGTCATATATTTGCCATGGGAGGCACAGAACATGGTCAATTAGGAAATCCTGTGTCCATTGGAAAAATACCTACTCTAGTCCAAGATAAGTTGCTTGGTGAAACTGTTGAGAAAATATCATGTGGAGCACATCATGTCGTTGCCTTGACCAAAAAAGGTGAACTATATACATGGGGAATGGGTGCCAATGGAAGATTAGGGCATGGAGATGTAGAAGATAGGAAATCTCCTACATTGGTGATAGCCTTGAAAGATAGGACTATAGAAAACATCTCATGTGGCTCTAACTTTACATCGTGTATATGCATCCATAAATGGGTCGCTGGAGCTGATCAAGCTCTTTGCTCTGGTTGTCGACAAGCATTTGGTATAACAAGAAAAAGACATAATTGTCACCACTGTGGTTTGGTTTTTTGTCATGCTTGTAGTACTAAAAGGGCATTCAAAACAGCATTGACTGCAACACCAGAAAAACTTCATCGTGTGTGTGATAATTGTTATGTGAAGCTTAAAGTTGTTGATGACAATGATTCTTCCAAGTTAGACAAAAAGGCTACTACTACTCATAACTCCATAAATGAAAAGGAAAAATCAAACCAAGGAGCAATAGTAAGATCTGCAAGAACTCTCTTAGCTCCTATAACTGAACCAGTGAAATACCTTGAAATAAAGAATAATAATCCTAATGGTAATGGTGATTCTACATCCTTTGTACGAGCTTCTCTAGTTCCATCTCTGGTGCAATTGAAAGATGTTGCATTTCCAAGTTCACTTAGTTCTTTTCAAAGTATTTTAAAGCCTATTATACCACCTAGTCCGCCACAAACTCCGCCACAAACTCCGCCGCGAACTCCGACCTCACATACCTATTCGGGACCCGTATTCACAAACACAGTGAGACAAATCGCTGCTCGTCCTGCCAGTCCTAGATTTTTAGGAAGTCTTAACGAAAGTTTAAGAAGGTCAAATGCTATTTTGAATCAAGAAGTTTCTAAGTTACAGAAACAGATTCAAAGTTTAAGGGAAAAAAGTGACATGCAAGATGTAGAAATCAAGAGGCTTAACAAAAAGGCTACGGAAGCTTTTGCCCTTGCTGCAGTGGAATCTTCTAATCACAGAGTAACAAAAGAATTTGTTGAATCTACTGTGTTTCAGATGAAGGAAATGACTGACAAATTGCCTAGAGAAATTTCAGAAAGTCGGAATTTGAGAAATGTACTTATTCGTGTTAAAGATTTTCTTAAAGAAACTTCCGAATCTGAAATATGTTCATCACCAAAGTTGGAGATTAAGTCAAAAATTGCATCTGATATACCTACCTCAAATAGTGACTCTTCCAAATTACAAGCTGAAGAAAATGTGGATGCTACAGAAGCCAAACCTAGTGAAGATGAACTTGAAAAAAAAAGAAATAAATCAAAGTTGAACTCTATACAACAAAATAAACCTACTTCAGATACCACCACTTCCAACATGCATGAACACGAACTAGATGAAAGTGTTCATACCATAGAACTTAACCATTGTGAAGGTAGAGGAAACTCTCTCAAAGAAAGTGATGAACCAACAAAGTCAGAAATTGAAAACCAAAATGCACCTCGTTCACTTTCCTCAGCTAGTGATGTTTCTGAAATGTCAGATGATAATAGAGTAGAGGAGAATGTTAAGGTTGCAGGAGTTGATGAATCTCAGGAACAAGAACATGTCTTTCAAAATTGTATTGGGTCATATGCTTCTACTATTGGTAAAACAATGCCTTCAGAAAACTCCAACAAGGGTTCAAGATCTTCACGACACGGAAAACAGGGAGAAGTACAAGTTATTGAAAAATTTGATCGTGGAGTTTATGTGATTCTCATGTTACAGTCTGATGGTACCAAAATTTTTAAACGAGTTAAATTCAGTAAAAGAAGGTTCACTGAAAATCAAGCAGAAAAATGGTGGAACGTAAACAAAGGTAGGGTTCTTAGGAAATATAGTCCAACAAATAAAAGTATAATAATTGGTCCATCTAATGTCACATCACATGTTAAAGAAATTATTGAGACACCTCCTTCCTCAATAGTTTAG 3012 0.3875 MQPRTSVGDGSRVCTSSIPSNSCGGSEQDDLDSFRDVYIWGEVLSNGVSPDGIATQVPSHIDVLIPKPLESNVILDVCHIATGAHHIAVVTKQGHVFTWGKESGGRLGHGIDNDFVSPREVKFLEDTDFDFVACGEYHTGVISKCYELYTWGDGAHNVGLLGHGSEASHWMPKMVIGPLEGVEVVSVACGTWHSALATSDGKLFTFGDGAFGVLGHGDQESVWYPKEVQLLSGLKTVKVACGVWHTAAIIEVEFQSGSNASSGKLFTWGDGDKHCLGHGNKETYLQPTRVAPLMEYNFQQVACGHTMTIALTTSGHIFAMGGTEHGQLGNPVSIGKIPTLVQDKLLGETVEKISCGAHHVVALTKKGELYTWGMGANGRLGHGDVEDRKSPTLVIALKDRTIENISCGSNFTSCICIHKWVAGADQALCSGCRQAFGITRKRHNCHHCGLVFCHACSTKRAFKTALTATPEKLHRVCDNCYVKLKVVDDNDSSKLDKKATTTHNSINEKEKSNQGAIVRSARTLLAPITEPVKYLEIKNNNPNGNGDSTSFVRASLVPSLVQLKDVAFPSSLSSFQSILKPIIPPSPPQTPPQTPPRTPTSHTYSGPVFTNTVRQIAARPASPRFLGSLNESLRRSNAILNQEVSKLQKQIQSLREKSDMQDVEIKRLNKKATEAFALAAVESSNHRVTKEFVESTVFQMKEMTDKLPREISESRNLRNVLIRVKDFLKETSESEICSSPKLEIKSKIASDIPTSNSDSSKLQAEENVDATEAKPSEDELEKKRNKSKLNSIQQNKPTSDTTTSNMHEHELDESVHTIELNHCEGRGNSLKESDEPTKSEIENQNAPRSLSSASDVSEMSDDNRVEENVKVAGVDESQEQEHVFQNCIGSYASTIGKTMPSENSNKGSRSSRHGKQGEVQVIEKFDRGVYVILMLQSDGTKIFKRVKFSKRRFTENQAEKWWNVNKGRVLRKYSPTNKSIIIGPSNVTSHVKEIIETPPSSIV* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00825 1003 MobiDBLite consensus disorder prediction 825 841 - -
Phac10g00825 1003 MobiDBLite consensus disorder prediction 749 807 - -
Phac10g00825 1003 Coils Coil 630 671 - -
Phac10g00825 1003 MobiDBLite consensus disorder prediction 765 788 - -
Phac10g00825 1003 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 239 249 IPR000408 -
Phac10g00825 1003 Pfam Transcription factor regulating root and shoot growth via Pin3 920 973 IPR013591 -
Phac10g00825 1003 SUPERFAMILY FYVE/PHD zinc finger 419 489 IPR011011 -
Phac10g00825 1003 Gene3D - 257 420 IPR009091 -
Phac10g00825 1003 Gene3D - 12 256 IPR009091 -
Phac10g00825 1003 ProSiteProfiles BRX domain profile. 919 974 IPR013591 -
Phac10g00825 1003 Pfam FYVE zinc finger 419 484 IPR000306 GO:0046872
Phac10g00825 1003 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 263 314 IPR000408 -
Phac10g00825 1003 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 423 485 IPR017455 -
Phac10g00825 1003 Pfam Regulator of chromosome condensation (RCC1) repeat 366 415 IPR000408 -
Phac10g00825 1003 Pfam Regulator of chromosome condensation (RCC1) repeat 200 249 IPR000408 -
Phac10g00825 1003 Pfam Regulator of chromosome condensation (RCC1) repeat 262 311 IPR000408 -
Phac10g00825 1003 Pfam Regulator of chromosome condensation (RCC1) repeat 94 142 IPR000408 -
Phac10g00825 1003 Pfam Regulator of chromosome condensation (RCC1) repeat 148 196 IPR000408 -
Phac10g00825 1003 Pfam Regulator of chromosome condensation (RCC1) repeat 314 363 IPR000408 -
Phac10g00825 1003 MobiDBLite consensus disorder prediction 825 864 - -
Phac10g00825 1003 MobiDBLite consensus disorder prediction 1 28 - -
Phac10g00825 1003 MobiDBLite consensus disorder prediction 579 604 - -
Phac10g00825 1003 MobiDBLite consensus disorder prediction 493 514 - -
Phac10g00825 1003 SUPERFAMILY RCC1/BLIP-II 35 420 IPR009091 -
Phac10g00825 1003 MobiDBLite consensus disorder prediction 895 917 - -
Phac10g00825 1003 MobiDBLite consensus disorder prediction 581 598 - -
Phac10g00825 1003 MobiDBLite consensus disorder prediction 842 858 - -
Phac10g00825 1003 CDD FYVE_like_SF 429 481 - -
Phac10g00825 1003 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 366 IPR000408 -
Phac10g00825 1003 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 80 90 IPR000408 -
Phac10g00825 1003 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 418 IPR000408 -
Phac10g00825 1003 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 94 145 IPR000408 -
Phac10g00825 1003 MobiDBLite consensus disorder prediction 749 764 - -
Phac10g00825 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 496 IPR013083 -
Phac10g00825 1003 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 146 200 IPR000408 -
Phac10g00825 1003 PRINTS Chromosome condensation regulator RCC1 signature 304 322 IPR000408 -
Phac10g00825 1003 PRINTS Chromosome condensation regulator RCC1 signature 187 203 IPR000408 -
Phac10g00825 1003 PRINTS Chromosome condensation regulator RCC1 signature 203 217 IPR000408 -
Phac10g00825 1003 PRINTS Chromosome condensation regulator RCC1 signature 96 112 IPR000408 -
Phac10g00825 1003 PRINTS Chromosome condensation regulator RCC1 signature 146 162 IPR000408 -
Phac10g00825 1003 PRINTS Chromosome condensation regulator RCC1 signature 362 383 IPR000408 -
Phac10g00825 1003 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 201 252 IPR000408 -
Phac10g00825 1003 SMART fyve_4 417 486 IPR000306 GO:0046872
Phac10g00825 1003 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 694 - -
Phac10g00825 1003 FunFam PH, RCC1 and FYVE domains-containing protein 1 6 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00825 Phac-Chr10 20850484 20864823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00825 918 973 Major Intrinsic Protein MIP AT1G31880 39.286 6.48e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00825 - - vra:106773411 1414.82