LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac10g00708	ATGTCTTTCAGTTTCACTGACCTCCTTTCCAACAGCAATAGCTTGACCATGGATGATGATCCTTTTGGACTTGAATTTGCCAACACATTCAAACAATTTCAACCTCTTTCACTACCTTCTTATTCAGAGTTCCCTCCTGGTTTTGCCCCAACAACACAGTCATTGAACTCACCCCTCTTCTTCTCTTCTCAAAATGTTCCTGCATCTTACACATCTGAGTCATCTTCCAGCATGAGCTTCAACATGAGAAACAGTTCAACTGGGGATCAGATAGGAAACAAGGAGGAAGAGAGAGACTGCTCTGACTTCTCTTTCCTAACAAAAACAAACCACGTGCCTCTCTTTCAATCTTCCACAAGCATGTTTGAAGTGGAGCCAGTAAAGAAACAGGACACAATGATATTGAATGAAGCTGCAAAGCAAACAGATTTCTCATCTGAGAAGACACAAACAAAATCTGAATATGTAATCACTCAGGGCTTCTCCACAGAAGTTGCCTCAATCAAACCTGAAATACAAAGCAATTCTACTTCTGTGTCTGTTCAATTTAACTCTAATAATGCTTTTAAGTCTATTAGAGAACAAAGGAAATCAGAAGATGGGTACAATTGGAGGAAGTATGGAGAGAAACAAGTGAAAGGAAGTGAGCATCCGCGCAGTTATTACAAGTGCACGTATCCAAATTGTCCAACAAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACATGTTACTGAAATAGTATACAGGGGAAGTCACAATCATTCTAAGCCACAGAACAGAAAAAATGGCTCTCAATCAATTCATCAAACTTCTTCATCCTGCACCATCTCAGGGATTTCAGATCAGTCTATGGGAGAGGAAGGTTTTGAGCAAACATCACAAACTAGTTGCTCTGGAGGGTTTGATGATGAGGACCTTGGACCTGAGGCCAAAAGATGGAAAGGAGAGAATGAAAATGATGACTATTCTAATTCATCAGCTGGGAGTAGAACTGCTAAGGAACCTAGAGTTGTGGTTCAAACCACAAGTGAAATTGACATACTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTGGTCAAAGGAAACCCAAACCCAAGGAGTTACTACAAATGCGTTAGCTCAGGTTGTCCAGTTAGAAAACATGTTGAGAGAGCTGCAAATGATATGAAAGCTGTGCTAACAACCTACGAAGGGAAACATAACCATGATGTGCCTTTAGGACGAGGAAGTGCAAGCTATAACAGAACTTCTCTAAACAACACCATCAGCAATGTAACAGTACCTGCCCCTATAAGGCCTTCAGCAGTGAATAATTACTCTAACTCAGCAAGTTTCACCAATTCACTCCCTGATACCAAGCTATCAGCATCTGCAAGTCAAGACACTATTCCAATGGACATGTTGTTGAACCCTGGAAGCCTAGGATTTTCGGCTAATGACTCATTCCTTCAGTCTTTTTTTTCAAAGAACTTCTAA	1485	0.4074	MSFSFTDLLSNSNSLTMDDDPFGLEFANTFKQFQPLSLPSYSEFPPGFAPTTQSLNSPLFFSSQNVPASYTSESSSSMSFNMRNSSTGDQIGNKEEERDCSDFSFLTKTNHVPLFQSSTSMFEVEPVKKQDTMILNEAAKQTDFSSEKTQTKSEYVITQGFSTEVASIKPEIQSNSTSVSVQFNSNNAFKSIREQRKSEDGYNWRKYGEKQVKGSEHPRSYYKCTYPNCPTKKKVERSLEGHVTEIVYRGSHNHSKPQNRKNGSQSIHQTSSSCTISGISDQSMGEEGFEQTSQTSCSGGFDDEDLGPEAKRWKGENENDDYSNSSAGSRTAKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVSSGCPVRKHVERAANDMKAVLTTYEGKHNHDVPLGRGSASYNRTSLNNTISNVTVPAPIRPSAVNNYSNSASFTNSLPDTKLSASASQDTIPMDMLLNPGSLGFSANDSFLQSFFSKNF*	495

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac10g00708	494	SUPERFAMILY	WRKY DNA-binding domain	340	408	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phac10g00708	494	MobiDBLite	consensus disorder prediction	251	300	-	-
	Phac10g00708	494	Gene3D	WRKY domain	333	409	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phac10g00708	494	Gene3D	WRKY domain	183	258	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phac10g00708	494	SUPERFAMILY	WRKY DNA-binding domain	194	257	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phac10g00708	494	MobiDBLite	consensus disorder prediction	248	338	-	-
	Phac10g00708	494	MobiDBLite	consensus disorder prediction	72	96	-	-
	Phac10g00708	494	ProSiteProfiles	WRKY domain profile.	343	408	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phac10g00708	494	MobiDBLite	consensus disorder prediction	320	338	-	-
	Phac10g00708	494	MobiDBLite	consensus disorder prediction	72	89	-	-
	Phac10g00708	494	FunFam	WRKY transcription factor	185	258	-	-
	Phac10g00708	494	SMART	WRKY_cls	348	407	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phac10g00708	494	SMART	WRKY_cls	198	256	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phac10g00708	494	ProSiteProfiles	WRKY domain profile.	199	257	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phac10g00708	494	FunFam	WRKY transcription factor 33	335	401	-	-
	Phac10g00708	494	Pfam	WRKY DNA -binding domain	199	254	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phac10g00708	494	Pfam	WRKY DNA -binding domain	349	405	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phac10g00708	494	MobiDBLite	consensus disorder prediction	304	319	-	-
	Phac10g00708	494	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	111	436	IPR044810	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac10g00708	Phac-Chr10	8612880	8616084	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac10g00708	193	444	WRKY Transcription Factor Family	AT2G38470	58.042	8.27e-104	318

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Phac10g00708		WRKY	6.9e-25	CL0274