Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00677 ATGGGAGGAGAAGGAAGGGCGGCGATGAAGAAGAAGAAGAACGCGAAATCTGGGGGCTTCGAGTCGCTCGGTCTGAGTCCGAATGTGTTCAGAGGAATCAAGCGCAAAGGTTACAAAGTCCCCACTCCCATTCAGCGCAAGACCATGCCCCTCATTCTCTCTGGCTCCGACGTCGTTGCCATGGCTCGCACCGGCTCCGGCAAAACGGCAGCGTTTCTCGTCCCCATGATTCACCGCCTCAACCAGCACATCCCTCAGTCTGGAGTCAGAGCCCTCATTCTGTCCCCCACTCGGGACCTCGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGCGCATTTCTCAGACCTTCGTGTGAGTTTGTTAGTTGGCGGCGATAGCATGGAGAGTCAGTTTGAGGAGCTGTCTCAGAGTCCTGATATTATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCGGAGGTTGATGACATGTCCTTGCGCAGCGTGGAGTACGTTGTTTTCGACGAGGCCGATTGTTTGTTTGGCATGGGTTTTGCGGAGCAGTTGCATCAGATTCTTTCTCAGCTCGGGGAGAATCGCCAGACCTTGCTTTTCAGTGCCACATTACCCAGTGCTCTTGCTGAATTTGCCAAGGCTGGTTTGAGAGACCCTCAGCTTGTTCGCCTCGACCTGGAGACTAAGATCAGCCCTGACTTGAAGCTCGCCTTCTTCACCTTGAGGCAGGAGGAGAAGTACCCCGCCCTGCTCTACTTGGTCAGGGAACATATTGGTTCTGATGAACAGTCATTGATTTTTGTCTCCACCAAACATCATGTGGAGTTTCTCAATGTTTTGTTTCGCCAAGAGGGTATTGAACCGTCTGTATGTTATGGTGACATGGATCAGGATGCTCGCAAAATCCATGTATCGAAGTTTAGGTCTAGAAAGACCATGTTGTTGATTGTCACCGACGTTGCGGCTCGTGGCATTGACATTCCATTGCTTGATAATGTTATCAATTGGGACTTCCCCCCCAAGCCTAAAATATTCGTCCATCGAGTTGGAAGGGCTGCGAGGGCTGGTCGAACTGGTACTGCATATTCTTTTGTGACTCCTGAGGATATGGCCTACCTCTTGGATCTTCATTTGTTTCTTTCAAAACCAATCAAACCTGCTCCCACTGAAGAAGAGTTCTTGCGGGATATGGATGGAGTATTGTCTAGATGTGACCAGGCAATGGCAAATAGAGAAACCATTTATGGTCGTTTCCCACAAAAAGTCATTGACCTTGTTTCAGACAGAGTTAGGGAAGTTATTGATACTTCTGCAGAACTGGAATTGTTGCAGAGGACCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTACCTGCCAAAGAGTCCATCAGAAGAGTAAAGGATTTGCCTCGTGAAGGGCTGCATCCAATGTTCATGAAGGTGTTGGAAACGGGGGAGTTAACAGCACTTGCATTTTCTGAGCATCTGAAAAAGTTTAGGCCAAAACAAACCATTTTGGAAGCTGAAGGAGAAGCAGCTAAATCAAAGCATCAACAGGGCCCTTCCGGGCAATGGGGTGATGTGATGAAAAGGAAAAGAGCCATCCATGAGAATGTTATAAATTTGGTTCATGAACAACAGCAGTCTAAGAATAATAAGGAGAAGGAGGAAATCGAATCAGAAATCAGTCCTTCCATGGAGAAAGGAAAAAAAGCACGTGGCACTAAGAGAAAGCCCCAGAGTTTCAAGGATGAGGATCACTATATAAGTTCAATACCAATAAATCAACATATGGAGGCCGGCCTTTCAGTAAAAGCCAATGAAGACTTTGCTTCAAATAGATTGGACTCAGCTGTCCTTGATCTAGTCGCAGATGATGGTGCTGGCATTCGGAAACAAAGATCTATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGACCGTGTTGCTGCAAATGGAAAGATAAAGACTGAGAGTGGTGCAAAAACGAAGGCCACCAAGACTGGTATGTATAAGAGGTGGAAAGAACGCTCACACGGTAAGATATCACTCAGAGGGACAAATGACGGTGATCCTCAGGAATCAACAAGTTTGGCAGGATCTTACCGAAGAGGTCGTGGGAATTTTAAAGGCAGCAACAAGCAGCATTCAATGCCCAATGCTCACGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAAAGGCAGAAAAAGGCTAACAGGACTTCTTATATAAAGAGCAAGTCGACGAAGGGTAAAAAGTTTGGTAAAAATGGTAAAAGAAGAAAAAGCAAATAG 2331 0.4599 MGGEGRAAMKKKKNAKSGGFESLGLSPNVFRGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMIHRLNQHIPQSGVRALILSPTRDLALQTLKFTKELAHFSDLRVSLLVGGDSMESQFEELSQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHQILSQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTLRQEEKYPALLYLVREHIGSDEQSLIFVSTKHHVEFLNVLFRQEGIEPSVCYGDMDQDARKIHVSKFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKPAPTEEEFLRDMDGVLSRCDQAMANRETIYGRFPQKVIDLVSDRVREVIDTSAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPREGLHPMFMKVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQGPSGQWGDVMKRKRAIHENVINLVHEQQQSKNNKEKEEIESEISPSMEKGKKARGTKRKPQSFKDEDHYISSIPINQHMEAGLSVKANEDFASNRLDSAVLDLVADDGAGIRKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGMYKRWKERSHGKISLRGTNDGDPQESTSLAGSYRRGRGNFKGSNKQHSMPNAHVRSEIKDMDQIRKERQKKANRTSYIKSKSTKGKKFGKNGKRRKSK* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00677 776 MobiDBLite consensus disorder prediction 697 711 - -
Phac10g00677 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Phac10g00677 776 SMART DBP10CT_2 624 686 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Phac10g00677 776 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Phac10g00677 776 Gene3D - 237 459 IPR027417 -
Phac10g00677 776 SMART ultradead3 37 244 IPR014001 -
Phac10g00677 776 MobiDBLite consensus disorder prediction 1 20 - -
Phac10g00677 776 MobiDBLite consensus disorder prediction 730 752 - -
Phac10g00677 776 MobiDBLite consensus disorder prediction 1 17 - -
Phac10g00677 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Phac10g00677 776 CDD SF2_C_DEAD 244 365 - -
Phac10g00677 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Phac10g00677 776 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Phac10g00677 776 MobiDBLite consensus disorder prediction 683 776 - -
Phac10g00677 776 MobiDBLite consensus disorder prediction 753 776 - -
Phac10g00677 776 Pfam Helicase conserved C-terminal domain 247 356 IPR001650 -
Phac10g00677 776 MobiDBLite consensus disorder prediction 551 573 - -
Phac10g00677 776 SMART helicmild6 275 356 IPR001650 -
Phac10g00677 776 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 689 - -
Phac10g00677 776 CDD DEADc_DDX54 18 223 IPR033517 -
Phac10g00677 776 Gene3D - 4 225 IPR027417 -
Phac10g00677 776 MobiDBLite consensus disorder prediction 549 585 - -
Phac10g00677 776 Pfam DBP10CT (NUC160) domain 624 685 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00677 Phac-Chr10 8219332 8224596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00677 1 389 Eukaryotic Initiation Factors Gene Family AT1G72730 31.458 2.91e-59 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00677 K14808 - gmx:100806274 1344.72