LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac10g00628	ATGGACTTTGGAGACACCATCAACACCTTCACCCTCCACACCCCCACCAAAGAGGAAACCGGTAACAACATTCTTTGGTATTCATCTTGGCTACAACAACCTACTAATGTTGTTTCTACTTCTAATTCTAGCTACATTAGTTCACCACACCCCACCACGGCGGCGGAGGATTACGCCGGCGGTGACCGCCGCCCAGTATACGGCAGCGACGGGTGTCACGTGCATGGGGACCCTCACCTCACGTGCTTGCATCTTGGTAAGAGACATTACTTTGAGGATCCTAATAACGGTGATGTTAGAAATAATAATAATAATAATAATAATAATAATAATAATAATATTGCTACTCTGGGAAAACCACCCGTATGTGTTGGTGATGGTGTTATTATTTCGGGGAACCGACACGTGGGCGGTGATGATGGTGTTATTACTCTGGGAAATCGACACGTGTACGGAAGTGATGGTGGTGCGGGTTATTTTTCAGAGGGTAATGATAAGAGAGCGAGGGGGTGTTATGGAGGAGCTACGGCTGCAGGTGCCGGTGGCGGCAGCGCGAAAACGGCGGCGTTTGGGACGGTTCCGAGGTGTCAGGTAGAGGGATGCCACGTGGCGTTGGTGAATTCAAAAGAGTACCATAGGAGGCACAGAGTTTGTGATATGCATTCGAAGGCGCCTAAAGTTGTGGTGTTGGGTTTGGTGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGACTCAAAGAGAAGTTGTAGGAGAAGATTAGCAGGGCATAATGAGAGAAGAAGAAAGAGCTCTCACCTCTCTGTTACTAGGAGTTCTCGACAAGGGTGCGCTCTCTCTCTTCTGTCATTTGGGAGCAGTGATAATTGGTCTTTTCATGCCGATCTCTCCACAAGATGCAGTGCAGCATTGCGTGAACTGATAGCAGAAAACCGTGCTGCCCTAATGACTAGACAACAACAGCAACAACACCAAGTTGTTTATGATAGAGATCACTGCCATGTTGTGCCCCACCATGATGATGCTGTGGATGAAGAAGAACAAGAGTTTGAGAAGATACAACCTGAGTCCAATTATTTTCCTCAACACATGTTTTCCCAGACACAATAA	1128	0.4707	MDFGDTINTFTLHTPTKEETGNNILWYSSWLQQPTNVVSTSNSSYISSPHPTTAAEDYAGGDRRPVYGSDGCHVHGDPHLTCLHLGKRHYFEDPNNGDVRNNNNNNNNNNNNNIATLGKPPVCVGDGVIISGNRHVGGDDGVITLGNRHVYGSDGGAGYFSEGNDKRARGCYGGATAAGAGGGSAKTAAFGTVPRCQVEGCHVALVNSKEYHRRHRVCDMHSKAPKVVVLGLVQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHLSVTRSSRQGCALSLLSFGSSDNWSFHADLSTRCSAALRELIAENRAALMTRQQQQQHQVVYDRDHCHVVPHHDDAVDEEEQEFEKIQPESNYFPQHMFSQTQ*	376

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Phac10g00628	375	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	94	327	IPR044817	GO:0003677
Phac10g00628	375	MobiDBLite	consensus disorder prediction	93	112	-	-
Phac10g00628	375	MobiDBLite	consensus disorder prediction	96	112	-	-
Phac10g00628	375	SUPERFAMILY	SBT domain	194	272	IPR036893	GO:0003677\|GO:0005634
Phac10g00628	375	Gene3D	-	189	257	IPR036893	GO:0003677\|GO:0005634
Phac10g00628	375	FunFam	Squamosa promoter-binding-like protein 14	187	257	-	-
Phac10g00628	375	ProSiteProfiles	Zinc finger SBP-type profile.	193	270	IPR004333	GO:0003677
Phac10g00628	375	MobiDBLite	consensus disorder prediction	42	62	-	-
Phac10g00628	375	Pfam	SBP domain	196	269	IPR004333	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac10g00628	Phac-Chr10	7749658	7752061	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac10g00628	193	291	SBP-box Gene Family	AT2G42200	63.366	3.72e-34	128

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Phac10g00628		SBP	1.8e-30	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac10g00628	-		-	pvu:PHAVU_010G056200g	679.863

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