Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00628 ATGGACTTTGGAGACACCATCAACACCTTCACCCTCCACACCCCCACCAAAGAGGAAACCGGTAACAACATTCTTTGGTATTCATCTTGGCTACAACAACCTACTAATGTTGTTTCTACTTCTAATTCTAGCTACATTAGTTCACCACACCCCACCACGGCGGCGGAGGATTACGCCGGCGGTGACCGCCGCCCAGTATACGGCAGCGACGGGTGTCACGTGCATGGGGACCCTCACCTCACGTGCTTGCATCTTGGTAAGAGACATTACTTTGAGGATCCTAATAACGGTGATGTTAGAAATAATAATAATAATAATAATAATAATAATAATAATAATATTGCTACTCTGGGAAAACCACCCGTATGTGTTGGTGATGGTGTTATTATTTCGGGGAACCGACACGTGGGCGGTGATGATGGTGTTATTACTCTGGGAAATCGACACGTGTACGGAAGTGATGGTGGTGCGGGTTATTTTTCAGAGGGTAATGATAAGAGAGCGAGGGGGTGTTATGGAGGAGCTACGGCTGCAGGTGCCGGTGGCGGCAGCGCGAAAACGGCGGCGTTTGGGACGGTTCCGAGGTGTCAGGTAGAGGGATGCCACGTGGCGTTGGTGAATTCAAAAGAGTACCATAGGAGGCACAGAGTTTGTGATATGCATTCGAAGGCGCCTAAAGTTGTGGTGTTGGGTTTGGTGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGACTCAAAGAGAAGTTGTAGGAGAAGATTAGCAGGGCATAATGAGAGAAGAAGAAAGAGCTCTCACCTCTCTGTTACTAGGAGTTCTCGACAAGGGTGCGCTCTCTCTCTTCTGTCATTTGGGAGCAGTGATAATTGGTCTTTTCATGCCGATCTCTCCACAAGATGCAGTGCAGCATTGCGTGAACTGATAGCAGAAAACCGTGCTGCCCTAATGACTAGACAACAACAGCAACAACACCAAGTTGTTTATGATAGAGATCACTGCCATGTTGTGCCCCACCATGATGATGCTGTGGATGAAGAAGAACAAGAGTTTGAGAAGATACAACCTGAGTCCAATTATTTTCCTCAACACATGTTTTCCCAGACACAATAA 1128 0.4707 MDFGDTINTFTLHTPTKEETGNNILWYSSWLQQPTNVVSTSNSSYISSPHPTTAAEDYAGGDRRPVYGSDGCHVHGDPHLTCLHLGKRHYFEDPNNGDVRNNNNNNNNNNNNNIATLGKPPVCVGDGVIISGNRHVGGDDGVITLGNRHVYGSDGGAGYFSEGNDKRARGCYGGATAAGAGGGSAKTAAFGTVPRCQVEGCHVALVNSKEYHRRHRVCDMHSKAPKVVVLGLVQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHLSVTRSSRQGCALSLLSFGSSDNWSFHADLSTRCSAALRELIAENRAALMTRQQQQQHQVVYDRDHCHVVPHHDDAVDEEEQEFEKIQPESNYFPQHMFSQTQ* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00628 375 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 94 327 IPR044817 GO:0003677
Phac10g00628 375 MobiDBLite consensus disorder prediction 93 112 - -
Phac10g00628 375 MobiDBLite consensus disorder prediction 96 112 - -
Phac10g00628 375 SUPERFAMILY SBT domain 194 272 IPR036893 GO:0003677|GO:0005634
Phac10g00628 375 Gene3D - 189 257 IPR036893 GO:0003677|GO:0005634
Phac10g00628 375 FunFam Squamosa promoter-binding-like protein 14 187 257 - -
Phac10g00628 375 ProSiteProfiles Zinc finger SBP-type profile. 193 270 IPR004333 GO:0003677
Phac10g00628 375 MobiDBLite consensus disorder prediction 42 62 - -
Phac10g00628 375 Pfam SBP domain 196 269 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00628 Phac-Chr10 7749658 7752061 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00628 193 291 SBP-box Gene Family AT2G42200 63.366 3.72e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac10g00628 SBP 1.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00628 - - pvu:PHAVU_010G056200g 679.863